Variations in macrobenthic community structures in relation to environmental variables in the Seto Inland Sea, Japan

•TOC was highly negatively correlated with two biodiversity indices.•42% of total sites were organically enriched with low population and biodiversity.•26% were sandy sediment with high proportion of Arthropoda.•Theora fragilis and Ptychoderidae were typical benthos in organically enriched sediments. A data set of 425 sites investigated by the Ministry of the Environment in 2001–2005 was used to evaluate the current sediment situation and its effect on macrobenthic community structure in the Seto Inland Sea, Japan. Cluster analysis and principle component analysis of sediments using physico-chemical parameters revealed that total organic carbon, mud, sulfide contents, and oxidation–reduction potential were important parameters influencing macrobenthic population size and biodiversity. A total organic carbon of 1mgg−1 interval was highly negatively correlated with two biodiversity indices in the range of 1–20mgg−1. Overall, 42% of total sites were organically enriched with much lower macrobenthic population sizes and biodiversity, while 26% were characterized by sandy sediment with a high population size and high proportion of Arthropoda. Nemertea sp., Glycera sp., Notomastus sp. and Ophiophragmus japonicus were common macrobenthos, while Theora fragilis and Ptychoderidae were typical macrobenthos in organically enriched sediments.