Alternative mRNA transcription, processing, and translation: insights from RNA sequencing

Highlights • RNA sequencing uncovers mechanisms regulating gene expression. • Use of alternative TSSs, PASs, and exons is the rule. • Alternative translation initiation at 5′-UTRs and downstream codons is widespread. • Transcription, RNA processing, and translation are often interdependent processes...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Trends in genetics 2015-03, Vol.31 (3), p.128-139
Hauptverfasser: de Klerk, Eleonora, t Hoen, Peter A.C
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 139
container_issue 3
container_start_page 128
container_title Trends in genetics
container_volume 31
creator de Klerk, Eleonora
t Hoen, Peter A.C
description Highlights • RNA sequencing uncovers mechanisms regulating gene expression. • Use of alternative TSSs, PASs, and exons is the rule. • Alternative translation initiation at 5′-UTRs and downstream codons is widespread. • Transcription, RNA processing, and translation are often interdependent processes.
doi_str_mv 10.1016/j.tig.2015.01.001
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_miscellaneous_1727677999</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><els_id>S0168952515000025</els_id><sourcerecordid>1727677999</sourcerecordid><originalsourceid>FETCH-LOGICAL-c577t-b7061aab2448c2f2ae2d5b5e9c814e9692b7b6d2ea5381336eb6e0729e04092e3</originalsourceid><addsrcrecordid>eNqFkU9v1DAQxX0A0VL4AFxQjhy6YezEdgwS0qqigFS1En8OnCzHmV28JM7i8Vbqt6-jLRw4wMmS573n8e8x9oJDzYGr17s6h20tgMsaeA3AH7HTct-tjBTyhD0l2gGA1I18wk6EVG3XGnPKvq_HjCm6HG6xmj5fr6ucXCSfwj6HOZ5X-zR7JApxe165OBzHo1uGb6oQKWx_ZKo2aZ6qxU3464DRF_kz9njjRsLnD-cZ-3b5_uvFx9XVzYdPF-urlZda51WvQXHnetG2nRcb4VAMspdofMdbNMqIXvdqEOhk0_GmUdgrBC0MQgtGYHPGXh1zy6blbcp2CuRxHF3E-UCWa6GV1saY_0uVbgWXnEOR8qPUp5ko4cbuU5hcurMc7ALc7mwBbhfgFrgtwIvn5UP8oZ9w-OP4TbsI3h4FWHjcBkyWfCi0cAgJfbbDHP4Z_-4vtx9DDN6NP_EOaTcfSo9j-YUlYcF-WdpfyueyFA9CNvfC9adL</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1674215110</pqid></control><display><type>article</type><title>Alternative mRNA transcription, processing, and translation: insights from RNA sequencing</title><source>MEDLINE</source><source>ScienceDirect Journals (5 years ago - present)</source><creator>de Klerk, Eleonora ; t Hoen, Peter A.C</creator><creatorcontrib>de Klerk, Eleonora ; t Hoen, Peter A.C</creatorcontrib><description>Highlights • RNA sequencing uncovers mechanisms regulating gene expression. • Use of alternative TSSs, PASs, and exons is the rule. • Alternative translation initiation at 5′-UTRs and downstream codons is widespread. • Transcription, RNA processing, and translation are often interdependent processes.</description><identifier>ISSN: 0168-9525</identifier><identifier>DOI: 10.1016/j.tig.2015.01.001</identifier><identifier>PMID: 25648499</identifier><language>eng</language><publisher>England: Elsevier Ltd</publisher><subject>alternative polyadenylation ; Alternative Splicing ; gene expression ; Gene Expression Profiling ; High-Throughput Nucleotide Sequencing - methods ; Humans ; Medical Education ; Polyadenylation ; Promoter Regions, Genetic - genetics ; Protein Biosynthesis ; RNA sequencing ; RNA, Messenger - genetics ; Sequence Analysis, RNA ; Transcription, Genetic ; Transcriptome ; translation</subject><ispartof>Trends in genetics, 2015-03, Vol.31 (3), p.128-139</ispartof><rights>Elsevier Ltd</rights><rights>2015 Elsevier Ltd</rights><rights>Copyright © 2015 Elsevier Ltd. All rights reserved.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c577t-b7061aab2448c2f2ae2d5b5e9c814e9692b7b6d2ea5381336eb6e0729e04092e3</citedby><cites>FETCH-LOGICAL-c577t-b7061aab2448c2f2ae2d5b5e9c814e9692b7b6d2ea5381336eb6e0729e04092e3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://dx.doi.org/10.1016/j.tig.2015.01.001$$EHTML$$P50$$Gelsevier$$H</linktohtml><link.rule.ids>314,780,784,3548,27922,27923,45993</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/25648499$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>de Klerk, Eleonora</creatorcontrib><creatorcontrib>t Hoen, Peter A.C</creatorcontrib><title>Alternative mRNA transcription, processing, and translation: insights from RNA sequencing</title><title>Trends in genetics</title><addtitle>Trends Genet</addtitle><description>Highlights • RNA sequencing uncovers mechanisms regulating gene expression. • Use of alternative TSSs, PASs, and exons is the rule. • Alternative translation initiation at 5′-UTRs and downstream codons is widespread. • Transcription, RNA processing, and translation are often interdependent processes.</description><subject>alternative polyadenylation</subject><subject>Alternative Splicing</subject><subject>gene expression</subject><subject>Gene Expression Profiling</subject><subject>High-Throughput Nucleotide Sequencing - methods</subject><subject>Humans</subject><subject>Medical Education</subject><subject>Polyadenylation</subject><subject>Promoter Regions, Genetic - genetics</subject><subject>Protein Biosynthesis</subject><subject>RNA sequencing</subject><subject>RNA, Messenger - genetics</subject><subject>Sequence Analysis, RNA</subject><subject>Transcription, Genetic</subject><subject>Transcriptome</subject><subject>translation</subject><issn>0168-9525</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkU9v1DAQxX0A0VL4AFxQjhy6YezEdgwS0qqigFS1En8OnCzHmV28JM7i8Vbqt6-jLRw4wMmS573n8e8x9oJDzYGr17s6h20tgMsaeA3AH7HTct-tjBTyhD0l2gGA1I18wk6EVG3XGnPKvq_HjCm6HG6xmj5fr6ucXCSfwj6HOZ5X-zR7JApxe165OBzHo1uGb6oQKWx_ZKo2aZ6qxU3464DRF_kz9njjRsLnD-cZ-3b5_uvFx9XVzYdPF-urlZda51WvQXHnetG2nRcb4VAMspdofMdbNMqIXvdqEOhk0_GmUdgrBC0MQgtGYHPGXh1zy6blbcp2CuRxHF3E-UCWa6GV1saY_0uVbgWXnEOR8qPUp5ko4cbuU5hcurMc7ALc7mwBbhfgFrgtwIvn5UP8oZ9w-OP4TbsI3h4FWHjcBkyWfCi0cAgJfbbDHP4Z_-4vtx9DDN6NP_EOaTcfSo9j-YUlYcF-WdpfyueyFA9CNvfC9adL</recordid><startdate>20150301</startdate><enddate>20150301</enddate><creator>de Klerk, Eleonora</creator><creator>t Hoen, Peter A.C</creator><general>Elsevier Ltd</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>P64</scope><scope>RC3</scope></search><sort><creationdate>20150301</creationdate><title>Alternative mRNA transcription, processing, and translation: insights from RNA sequencing</title><author>de Klerk, Eleonora ; t Hoen, Peter A.C</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c577t-b7061aab2448c2f2ae2d5b5e9c814e9692b7b6d2ea5381336eb6e0729e04092e3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>alternative polyadenylation</topic><topic>Alternative Splicing</topic><topic>gene expression</topic><topic>Gene Expression Profiling</topic><topic>High-Throughput Nucleotide Sequencing - methods</topic><topic>Humans</topic><topic>Medical Education</topic><topic>Polyadenylation</topic><topic>Promoter Regions, Genetic - genetics</topic><topic>Protein Biosynthesis</topic><topic>RNA sequencing</topic><topic>RNA, Messenger - genetics</topic><topic>Sequence Analysis, RNA</topic><topic>Transcription, Genetic</topic><topic>Transcriptome</topic><topic>translation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>de Klerk, Eleonora</creatorcontrib><creatorcontrib>t Hoen, Peter A.C</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><jtitle>Trends in genetics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>de Klerk, Eleonora</au><au>t Hoen, Peter A.C</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Alternative mRNA transcription, processing, and translation: insights from RNA sequencing</atitle><jtitle>Trends in genetics</jtitle><addtitle>Trends Genet</addtitle><date>2015-03-01</date><risdate>2015</risdate><volume>31</volume><issue>3</issue><spage>128</spage><epage>139</epage><pages>128-139</pages><issn>0168-9525</issn><abstract>Highlights • RNA sequencing uncovers mechanisms regulating gene expression. • Use of alternative TSSs, PASs, and exons is the rule. • Alternative translation initiation at 5′-UTRs and downstream codons is widespread. • Transcription, RNA processing, and translation are often interdependent processes.</abstract><cop>England</cop><pub>Elsevier Ltd</pub><pmid>25648499</pmid><doi>10.1016/j.tig.2015.01.001</doi><tpages>12</tpages></addata></record>
fulltext fulltext
identifier ISSN: 0168-9525
ispartof Trends in genetics, 2015-03, Vol.31 (3), p.128-139
issn 0168-9525
language eng
recordid cdi_proquest_miscellaneous_1727677999
source MEDLINE; ScienceDirect Journals (5 years ago - present)
subjects alternative polyadenylation
Alternative Splicing
gene expression
Gene Expression Profiling
High-Throughput Nucleotide Sequencing - methods
Humans
Medical Education
Polyadenylation
Promoter Regions, Genetic - genetics
Protein Biosynthesis
RNA sequencing
RNA, Messenger - genetics
Sequence Analysis, RNA
Transcription, Genetic
Transcriptome
translation
title Alternative mRNA transcription, processing, and translation: insights from RNA sequencing
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-09T23%3A36%3A50IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Alternative%20mRNA%20transcription,%20processing,%20and%20translation:%20insights%20from%20RNA%20sequencing&rft.jtitle=Trends%20in%20genetics&rft.au=de%20Klerk,%20Eleonora&rft.date=2015-03-01&rft.volume=31&rft.issue=3&rft.spage=128&rft.epage=139&rft.pages=128-139&rft.issn=0168-9525&rft_id=info:doi/10.1016/j.tig.2015.01.001&rft_dat=%3Cproquest_cross%3E1727677999%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=1674215110&rft_id=info:pmid/25648499&rft_els_id=S0168952515000025&rfr_iscdi=true