Hymenobacter humi sp. nov., a bacterium isolated from soil
A red-pink coloured, Gram-negative, rod-shaped bacterium designated as strain DG31A T was isolated from soil collected in Seoul, South Korea. The isolate was found to grow optimally at 25 °C on R2A agar. The highest degrees of 16S rRNA gene sequence similarities of the strain were found with Hymenob...
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Veröffentlicht in: | Antonie van Leeuwenhoek 2015-06, Vol.107 (6), p.1411-1419 |
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Zusammenfassung: | A red-pink coloured, Gram-negative, rod-shaped bacterium designated as strain DG31A
T
was isolated from soil collected in Seoul, South Korea. The isolate was found to grow optimally at 25 °C on R2A agar. The highest degrees of 16S rRNA gene sequence similarities of the strain were found with
Hymenobacter arizonensis
JCM 13504
T
(98.0 %),
Hymenobacter glaciei
VUG-A130
T
(96.1 %),
Hymenobacter soli
PB17
T
(95.2 %),
Hymenobacter antarcticus
VUG-A42aa
T
(94.7 %) and
Hymenobacter
chitinivorans
Txc1
T
(92.8 %). The DNA G+C content of the novel strain, DG31A
T
, was determined to be 60.8 mol%. Chemotaxonomic data revealed that the major fatty acids were summed feature 3 (C
16:1
ω
7
c
and/or C
16:1
ω
6
c
; 26.7 %), C
16:1
ω
5
c
(18.9 %) and anteiso-C
15:0
(12.9 %); the major polar lipid was identified as phosphatidylethanolamine; the polyamine pattern was found to contain
sym
-homospermidine; and the major quinone was identified as MK-7. The DNA–DNA relatedness of strain DG31A
T
with respect to
H.
arizonensis
JCM 13504
T
was 19.5 ± 2.9 % (reciprocal, 19.3 ± 0.6 %). Based on these data, strain DG31A
T
should be classified within the genus
Hymenobacter
as a novel species for which the name
Hymenobacter humi
sp. nov. is proposed, with the type strain DG31A
T
(=KCTC 32523
T
= JCM 19635
T
). |
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ISSN: | 0003-6072 1572-9699 |
DOI: | 10.1007/s10482-015-0436-0 |