Genetic diversity of Ceratoides arborescens, a species endemic to China, detected by inter-simple sequence repeat (ISSR)
In order to investigate genetic diversity and population structure of Ceratoides arborescens, six populations were selected from different steppe types in Inner Mongolia grasslands of China. Inter-simple sequence repeat (ISSR) markers were used to assess the genetic diversity within and among natura...
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| Veröffentlicht in: | Genetics and molecular research 2015-05, Vol.14 (2), p.5658-5666 |
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| creator | Wang, P C Zhao, L L Mo, B T Zhang, Y Chen, J Wang, L B |
| description | In order to investigate genetic diversity and population structure of Ceratoides arborescens, six populations were selected from different steppe types in Inner Mongolia grasslands of China. Inter-simple sequence repeat (ISSR) markers were used to assess the genetic diversity within and among natural populations of C. arborescens. Thirteen ISSR primers generated 154 discernible DNA bands, of which 151 (98.05%) were polymorphic. High genetic diversity was detected at the species level [percentage of polymorphic loci (PPB) = 98.05%; H = 0.2984; I = 0.4557], whereas, relatively low genetic diversity existed within populations (PPB = 80.62%; H = 0.2675; I = 0.4031). Analysis of molecular variance showed that variation existed mainly within populations (73.25%) rather than among populations (26.75%), which was in line with the high level of gene flow (Nm = 4.3332). The Mantel test found no significant correlation between genetic distance and geographic distance (r = 0.7522, P < 0.05). Six populations were clustered into two main groups, a desert steppe group and a typical steppe group. |
| doi_str_mv | 10.4238/2015.May.25.18 |
| format | Article |
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Inter-simple sequence repeat (ISSR) markers were used to assess the genetic diversity within and among natural populations of C. arborescens. Thirteen ISSR primers generated 154 discernible DNA bands, of which 151 (98.05%) were polymorphic. High genetic diversity was detected at the species level [percentage of polymorphic loci (PPB) = 98.05%; H = 0.2984; I = 0.4557], whereas, relatively low genetic diversity existed within populations (PPB = 80.62%; H = 0.2675; I = 0.4031). Analysis of molecular variance showed that variation existed mainly within populations (73.25%) rather than among populations (26.75%), which was in line with the high level of gene flow (Nm = 4.3332). The Mantel test found no significant correlation between genetic distance and geographic distance (r = 0.7522, P < 0.05). 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Inter-simple sequence repeat (ISSR) markers were used to assess the genetic diversity within and among natural populations of C. arborescens. Thirteen ISSR primers generated 154 discernible DNA bands, of which 151 (98.05%) were polymorphic. High genetic diversity was detected at the species level [percentage of polymorphic loci (PPB) = 98.05%; H = 0.2984; I = 0.4557], whereas, relatively low genetic diversity existed within populations (PPB = 80.62%; H = 0.2675; I = 0.4031). Analysis of molecular variance showed that variation existed mainly within populations (73.25%) rather than among populations (26.75%), which was in line with the high level of gene flow (Nm = 4.3332). The Mantel test found no significant correlation between genetic distance and geographic distance (r = 0.7522, P < 0.05). Six populations were clustered into two main groups, a desert steppe group and a typical steppe group.</description><subject>Amaranthaceae - genetics</subject><subject>China</subject><subject>DNA, Plant - genetics</subject><subject>Genetic Variation</subject><subject>Genetics, Population</subject><subject>Microsatellite Repeats - genetics</subject><subject>Polymorphism, Genetic</subject><issn>1676-5680</issn><issn>1676-5680</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2015</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpNkEtLAzEUhYMo1tfWpWRZoTPmMclkllK0FiqCug-ZzA1GOg-TVOy_d6RVXN3L5ZzDPR9Cl5TkBePqhhEq8kezzZnIqTpAJ1SWMhNSkcN_-wSdxvhOCBOFIsdowiRlopTFCfpaQAfJW9z4TwjRpy3uHZ5DMKn3DURsQt0HiBa6OMMGxwGsH8_QNdCOttTj-ZvvzAw3kMAmaHC9xb5LELLo22ENOMLHBjoLOMAAJuHp8uXl-focHTmzjnCxn2fo9f7udf6QrZ4Wy_ntKrOci5Rx51xVcgYWeEmIdFyyylnTVKpUlFSMsaIAJxS4WkgQNWGFLYqaKZDMVfwMTXexQ-jHN2LSrR_LrNemg34TNS2pkEIRJkdpvpPa0McYwOkh-NaEraZE_8DWP7D1CFszoakaDVf77E3dQvMn_6XLvwFJ5nrz</recordid><startdate>20150525</startdate><enddate>20150525</enddate><creator>Wang, P C</creator><creator>Zhao, L L</creator><creator>Mo, B T</creator><creator>Zhang, Y</creator><creator>Chen, J</creator><creator>Wang, L B</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope></search><sort><creationdate>20150525</creationdate><title>Genetic diversity of Ceratoides arborescens, a species endemic to China, detected by inter-simple sequence repeat (ISSR)</title><author>Wang, P C ; Zhao, L L ; Mo, B T ; Zhang, Y ; Chen, J ; Wang, L B</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-3fff9732ece37006f3629fcad987810922244ef58efb56e5b024c44b28e62f93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2015</creationdate><topic>Amaranthaceae - genetics</topic><topic>China</topic><topic>DNA, Plant - genetics</topic><topic>Genetic Variation</topic><topic>Genetics, Population</topic><topic>Microsatellite Repeats - genetics</topic><topic>Polymorphism, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, P C</creatorcontrib><creatorcontrib>Zhao, L L</creatorcontrib><creatorcontrib>Mo, B T</creatorcontrib><creatorcontrib>Zhang, Y</creatorcontrib><creatorcontrib>Chen, J</creatorcontrib><creatorcontrib>Wang, L B</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Genetics and molecular research</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, P C</au><au>Zhao, L L</au><au>Mo, B T</au><au>Zhang, Y</au><au>Chen, J</au><au>Wang, L B</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genetic diversity of Ceratoides arborescens, a species endemic to China, detected by inter-simple sequence repeat (ISSR)</atitle><jtitle>Genetics and molecular research</jtitle><addtitle>Genet Mol Res</addtitle><date>2015-05-25</date><risdate>2015</risdate><volume>14</volume><issue>2</issue><spage>5658</spage><epage>5666</epage><pages>5658-5666</pages><issn>1676-5680</issn><eissn>1676-5680</eissn><abstract>In order to investigate genetic diversity and population structure of Ceratoides arborescens, six populations were selected from different steppe types in Inner Mongolia grasslands of China. Inter-simple sequence repeat (ISSR) markers were used to assess the genetic diversity within and among natural populations of C. arborescens. Thirteen ISSR primers generated 154 discernible DNA bands, of which 151 (98.05%) were polymorphic. High genetic diversity was detected at the species level [percentage of polymorphic loci (PPB) = 98.05%; H = 0.2984; I = 0.4557], whereas, relatively low genetic diversity existed within populations (PPB = 80.62%; H = 0.2675; I = 0.4031). Analysis of molecular variance showed that variation existed mainly within populations (73.25%) rather than among populations (26.75%), which was in line with the high level of gene flow (Nm = 4.3332). The Mantel test found no significant correlation between genetic distance and geographic distance (r = 0.7522, P < 0.05). 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| subjects | Amaranthaceae - genetics China DNA, Plant - genetics Genetic Variation Genetics, Population Microsatellite Repeats - genetics Polymorphism, Genetic |
| title | Genetic diversity of Ceratoides arborescens, a species endemic to China, detected by inter-simple sequence repeat (ISSR) |
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