Clustal Omega

Clustal Omega

Clustal Omega is a package for making multiple sequence alignments of amino acid or nucleotide sequences, quickly and accurately. It is a complete upgrade and rewrite of earlier Clustal programs. This unit describes how to run Clustal Omega interactively from a command line, although it can also be...

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Veröffentlicht in:Current Protocols in Bioinformatics 2014-12, Vol.48 (1), p.3.13.1-3.13.16
Hauptverfasser: Sievers, Fabian, Higgins, Desmond G.
Format: Artikel
Sprache:eng
Schlagworte:
Amino Acid Sequence
Base Sequence
Clustal Omega
hidden Markov model
HMM
iteration
multiple sequence alignment
Sequence Alignment
Sequence Homology, Amino Acid
Software
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Beschreibung
Zusammenfassung:Clustal Omega is a package for making multiple sequence alignments of amino acid or nucleotide sequences, quickly and accurately. It is a complete upgrade and rewrite of earlier Clustal programs. This unit describes how to run Clustal Omega interactively from a command line, although it can also be run online from several sites. The unit describes a basic protocol for taking a set of unaligned sequences and producing a full alignment. There are also protocols for using an external HMM or iteration to help improve an alignment. © 2014 by John Wiley & Sons, Inc.
ISSN:1934-3396
1934-340X
DOI:10.1002/0471250953.bi0313s48