Recognition of DNA gene fragments using hidden Markov models

Recognition of DNA gene fragments using hidden Markov models

A model of the recognition of functional sites of genes in DNA on the basis of hidden Markov models is considered. It is shown how algorithms based on Markov chain models of various orders can be used to detect fragments of genes of three genomes of higher organisms.

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Veröffentlicht in:Cybernetics and systems analysis 2012-05, Vol.48 (3), p.369-377
Hauptverfasser: Sergienko, I. V., Gupal, A. M., Ostrovsky, A. V.
Format: Artikel
Sprache:eng
Schlagworte:
Algorithms
Analysis
Artificial Intelligence
Control
Cybernetics
Deoxyribonucleic acid
DNA
Genes
Genomes
Genomics
Markov analysis
Markov processes
Mathematics
Mathematics and Statistics
Organisms
Polytopes
Processor Architectures
Proteins
Software Engineering/Programming and Operating Systems
Studies
Systems Analysis
Systems Theory
Variables
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Beschreibung
Zusammenfassung:A model of the recognition of functional sites of genes in DNA on the basis of hidden Markov models is considered. It is shown how algorithms based on Markov chain models of various orders can be used to detect fragments of genes of three genomes of higher organisms.
ISSN:1060-0396
1573-8337
DOI:10.1007/s10559-012-9416-9