Verrucosispora wenchangensis sp. nov., isolated from mangrove soil
An actinomycete strain 234402 T was isolated from a mangrove soil sample collected in Wenchang, China. Phylogenetic analysis of the 16S rRNA gene sequence of strain 234402 T indicated that the highest similarity was to Verrucosispora sediminis MS426 T (99.25%). The cell wall contained meso -diaminop...
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| Veröffentlicht in: | Antonie van Leeuwenhoek 2012-06, Vol.102 (1), p.1-7 |
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| creator | Xie, Qing-yi Lin, Hai-peng Li, Lei Brown, Roselyn Goodfellow, Michael Deng, Zixin Hong, Kui |
| description | An actinomycete strain 234402
T
was isolated from a mangrove soil sample collected in Wenchang, China. Phylogenetic analysis of the 16S rRNA gene sequence of strain 234402
T
indicated that the highest similarity was to
Verrucosispora sediminis
MS426
T
(99.25%). The cell wall contained
meso
-diaminopimelic acid. The major menaquinones were MK-9(H
4
) and MK-9(H
6
), with MK-9(H
8
) as minor components. The characteristic whole-cell sugars were xylose, mannose and glucose. The phospholipid profile was found to comprise phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol mannoside and an unknown phospholipid. The DNA G+C content was 69.2 mol%. The results of physiological and biochemical tests and low DNA–DNA relatedness demonstrated strain 234402
T
could be readily distinguished from the closely related
Verrucosispora
species. On the basis of these phenotypic and genotypic data, strain 234402
T
represents a novel species of the genus
Verrucosispora
, for which the name
Verrucosispora wenchangensis
sp. nov. is proposed. The type strain is 234402
T
(=CCTCC AA 2011018
T
=DSM 45674
T
). |
| doi_str_mv | 10.1007/s10482-012-9707-1 |
| format | Article |
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T
was isolated from a mangrove soil sample collected in Wenchang, China. Phylogenetic analysis of the 16S rRNA gene sequence of strain 234402
T
indicated that the highest similarity was to
Verrucosispora sediminis
MS426
T
(99.25%). The cell wall contained
meso
-diaminopimelic acid. The major menaquinones were MK-9(H
4
) and MK-9(H
6
), with MK-9(H
8
) as minor components. The characteristic whole-cell sugars were xylose, mannose and glucose. The phospholipid profile was found to comprise phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol mannoside and an unknown phospholipid. The DNA G+C content was 69.2 mol%. The results of physiological and biochemical tests and low DNA–DNA relatedness demonstrated strain 234402
T
could be readily distinguished from the closely related
Verrucosispora
species. On the basis of these phenotypic and genotypic data, strain 234402
T
represents a novel species of the genus
Verrucosispora
, for which the name
Verrucosispora wenchangensis
sp. nov. is proposed. The type strain is 234402
T
(=CCTCC AA 2011018
T
=DSM 45674
T
).</description><identifier>ISSN: 0003-6072</identifier><identifier>EISSN: 1572-9699</identifier><identifier>DOI: 10.1007/s10482-012-9707-1</identifier><identifier>PMID: 22331447</identifier><identifier>CODEN: ANLEDR</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Actinomycetes ; Bacteria ; Bacteriology ; Base Composition ; Biochemical tests ; Biological and medical sciences ; Biomedical and Life Sciences ; Carbohydrates - analysis ; Cell Wall - chemistry ; China ; Cluster Analysis ; Cytosol - chemistry ; Deoxyribonucleic acid ; Diaminopimelic Acid - analysis ; DNA ; DNA, Bacterial - chemistry ; DNA, Bacterial - genetics ; DNA, Ribosomal - chemistry ; DNA, Ribosomal - genetics ; Fundamental and applied biological sciences. Psychology ; Life Sciences ; Medical Microbiology ; Microbiology ; Micromonosporaceae - chemistry ; Micromonosporaceae - classification ; Micromonosporaceae - genetics ; Micromonosporaceae - isolation & purification ; Molecular Sequence Data ; Nucleic Acid Hybridization ; Original Paper ; Phospholipids - analysis ; Phylogenetics ; Phylogeny ; Plant Sciences ; Ribonucleic acid ; RNA ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA ; Soil Microbiology ; Soil microorganisms ; Soil Science & Conservation ; Systematics ; Taxonomy ; Vitamin K 2 - analysis ; Wetlands</subject><ispartof>Antonie van Leeuwenhoek, 2012-06, Vol.102 (1), p.1-7</ispartof><rights>Springer Science+Business Media B.V. 2012</rights><rights>2014 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c435t-dd3706d28ae4d25473ba4e952e270f94af68ab35297754720acff6f924c0035d3</citedby><cites>FETCH-LOGICAL-c435t-dd3706d28ae4d25473ba4e952e270f94af68ab35297754720acff6f924c0035d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s10482-012-9707-1$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s10482-012-9707-1$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,780,784,27924,27925,41488,42557,51319</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25907244$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22331447$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Xie, Qing-yi</creatorcontrib><creatorcontrib>Lin, Hai-peng</creatorcontrib><creatorcontrib>Li, Lei</creatorcontrib><creatorcontrib>Brown, Roselyn</creatorcontrib><creatorcontrib>Goodfellow, Michael</creatorcontrib><creatorcontrib>Deng, Zixin</creatorcontrib><creatorcontrib>Hong, Kui</creatorcontrib><title>Verrucosispora wenchangensis sp. nov., isolated from mangrove soil</title><title>Antonie van Leeuwenhoek</title><addtitle>Antonie van Leeuwenhoek</addtitle><addtitle>Antonie Van Leeuwenhoek</addtitle><description>An actinomycete strain 234402
T
was isolated from a mangrove soil sample collected in Wenchang, China. Phylogenetic analysis of the 16S rRNA gene sequence of strain 234402
T
indicated that the highest similarity was to
Verrucosispora sediminis
MS426
T
(99.25%). The cell wall contained
meso
-diaminopimelic acid. The major menaquinones were MK-9(H
4
) and MK-9(H
6
), with MK-9(H
8
) as minor components. The characteristic whole-cell sugars were xylose, mannose and glucose. The phospholipid profile was found to comprise phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol mannoside and an unknown phospholipid. The DNA G+C content was 69.2 mol%. The results of physiological and biochemical tests and low DNA–DNA relatedness demonstrated strain 234402
T
could be readily distinguished from the closely related
Verrucosispora
species. On the basis of these phenotypic and genotypic data, strain 234402
T
represents a novel species of the genus
Verrucosispora
, for which the name
Verrucosispora wenchangensis
sp. nov. is proposed. The type strain is 234402
T
(=CCTCC AA 2011018
T
=DSM 45674
T
).</description><subject>Actinomycetes</subject><subject>Bacteria</subject><subject>Bacteriology</subject><subject>Base Composition</subject><subject>Biochemical tests</subject><subject>Biological and medical sciences</subject><subject>Biomedical and Life Sciences</subject><subject>Carbohydrates - analysis</subject><subject>Cell Wall - chemistry</subject><subject>China</subject><subject>Cluster Analysis</subject><subject>Cytosol - chemistry</subject><subject>Deoxyribonucleic acid</subject><subject>Diaminopimelic Acid - analysis</subject><subject>DNA</subject><subject>DNA, Bacterial - chemistry</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal - chemistry</subject><subject>DNA, Ribosomal - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Life Sciences</subject><subject>Medical Microbiology</subject><subject>Microbiology</subject><subject>Micromonosporaceae - chemistry</subject><subject>Micromonosporaceae - classification</subject><subject>Micromonosporaceae - genetics</subject><subject>Micromonosporaceae - isolation & purification</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Hybridization</subject><subject>Original Paper</subject><subject>Phospholipids - analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Plant Sciences</subject><subject>Ribonucleic acid</subject><subject>RNA</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><subject>Soil Microbiology</subject><subject>Soil microorganisms</subject><subject>Soil Science & Conservation</subject><subject>Systematics</subject><subject>Taxonomy</subject><subject>Vitamin K 2 - analysis</subject><subject>Wetlands</subject><issn>0003-6072</issn><issn>1572-9699</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNqNkUtLxDAUhYMozvj4AW6kIIILO-bZNEsdfMGAG3VbMmmiHdpmzJ2O-O9NnfGBILgKN_e75-bkIHRA8IhgLM-AYJ7TFBOaKollSjbQkAgZq0ypTTTEGLM0w5IO0A7ALJYqy-U2GlDKGOFcDtHFow2hMx4qmPugk1fbmmfdPtk23iQwHyWtX45Okwp8rRe2TFzwTdJEIvilTcBX9R7acroGu78-d9HD1eX9-Cad3F3fjs8nqeFMLNKyZBJnJc215SUVXLKp5lYJaqnETnHtslxPmaBKytilWBvnMqcoN9GGKNkuOlnpzoN_6SwsiqYCY-tat9Z3UBBMc0yZ4PwfKGFS5EySiB79Qme-C2000lNUSpKzXpCsKBM8QLCumIeq0eEtQkWfRbHKoogjRZ9F0SsfrpW7aWPLr4nPz4_A8RrQYHTtgm5NBd-cUDG6Dzd0xUFsxWjCzyf-tf0dyvmekg</recordid><startdate>20120601</startdate><enddate>20120601</enddate><creator>Xie, Qing-yi</creator><creator>Lin, Hai-peng</creator><creator>Li, Lei</creator><creator>Brown, Roselyn</creator><creator>Goodfellow, Michael</creator><creator>Deng, Zixin</creator><creator>Hong, Kui</creator><general>Springer Netherlands</general><general>Springer</general><general>Springer Nature B.V</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>C1K</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0S</scope><scope>M1P</scope><scope>M2P</scope><scope>M7N</scope><scope>M7P</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>7X8</scope><scope>F1W</scope><scope>H95</scope><scope>L.G</scope></search><sort><creationdate>20120601</creationdate><title>Verrucosispora wenchangensis sp. nov., isolated from mangrove soil</title><author>Xie, Qing-yi ; Lin, Hai-peng ; Li, Lei ; Brown, Roselyn ; Goodfellow, Michael ; Deng, Zixin ; Hong, Kui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c435t-dd3706d28ae4d25473ba4e952e270f94af68ab35297754720acff6f924c0035d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Actinomycetes</topic><topic>Bacteria</topic><topic>Bacteriology</topic><topic>Base Composition</topic><topic>Biochemical tests</topic><topic>Biological and medical sciences</topic><topic>Biomedical and Life Sciences</topic><topic>Carbohydrates - analysis</topic><topic>Cell Wall - chemistry</topic><topic>China</topic><topic>Cluster Analysis</topic><topic>Cytosol - chemistry</topic><topic>Deoxyribonucleic acid</topic><topic>Diaminopimelic Acid - analysis</topic><topic>DNA</topic><topic>DNA, Bacterial - chemistry</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal - chemistry</topic><topic>DNA, Ribosomal - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Life Sciences</topic><topic>Medical Microbiology</topic><topic>Microbiology</topic><topic>Micromonosporaceae - chemistry</topic><topic>Micromonosporaceae - classification</topic><topic>Micromonosporaceae - genetics</topic><topic>Micromonosporaceae - isolation & purification</topic><topic>Molecular Sequence Data</topic><topic>Nucleic Acid Hybridization</topic><topic>Original Paper</topic><topic>Phospholipids - analysis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Plant Sciences</topic><topic>Ribonucleic acid</topic><topic>RNA</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><topic>Soil Microbiology</topic><topic>Soil microorganisms</topic><topic>Soil Science & Conservation</topic><topic>Systematics</topic><topic>Taxonomy</topic><topic>Vitamin K 2 - analysis</topic><topic>Wetlands</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xie, Qing-yi</creatorcontrib><creatorcontrib>Lin, Hai-peng</creatorcontrib><creatorcontrib>Li, Lei</creatorcontrib><creatorcontrib>Brown, Roselyn</creatorcontrib><creatorcontrib>Goodfellow, Michael</creatorcontrib><creatorcontrib>Deng, Zixin</creatorcontrib><creatorcontrib>Hong, Kui</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Industrial and Applied Microbiology Abstracts (Microbiology A)</collection><collection>Virology and AIDS Abstracts</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>Environmental Sciences and Pollution Management</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Science Database</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>MEDLINE - 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T
was isolated from a mangrove soil sample collected in Wenchang, China. Phylogenetic analysis of the 16S rRNA gene sequence of strain 234402
T
indicated that the highest similarity was to
Verrucosispora sediminis
MS426
T
(99.25%). The cell wall contained
meso
-diaminopimelic acid. The major menaquinones were MK-9(H
4
) and MK-9(H
6
), with MK-9(H
8
) as minor components. The characteristic whole-cell sugars were xylose, mannose and glucose. The phospholipid profile was found to comprise phosphatidylethanolamine, diphosphatidylglycerol, phosphatidylinositol mannoside and an unknown phospholipid. The DNA G+C content was 69.2 mol%. The results of physiological and biochemical tests and low DNA–DNA relatedness demonstrated strain 234402
T
could be readily distinguished from the closely related
Verrucosispora
species. On the basis of these phenotypic and genotypic data, strain 234402
T
represents a novel species of the genus
Verrucosispora
, for which the name
Verrucosispora wenchangensis
sp. nov. is proposed. The type strain is 234402
T
(=CCTCC AA 2011018
T
=DSM 45674
T
).</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><pmid>22331447</pmid><doi>10.1007/s10482-012-9707-1</doi><tpages>7</tpages></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 0003-6072 |
| ispartof | Antonie van Leeuwenhoek, 2012-06, Vol.102 (1), p.1-7 |
| issn | 0003-6072 1572-9699 |
| language | eng |
| recordid | cdi_proquest_miscellaneous_1028023544 |
| source | MEDLINE; SpringerNature Journals |
| subjects | Actinomycetes Bacteria Bacteriology Base Composition Biochemical tests Biological and medical sciences Biomedical and Life Sciences Carbohydrates - analysis Cell Wall - chemistry China Cluster Analysis Cytosol - chemistry Deoxyribonucleic acid Diaminopimelic Acid - analysis DNA DNA, Bacterial - chemistry DNA, Bacterial - genetics DNA, Ribosomal - chemistry DNA, Ribosomal - genetics Fundamental and applied biological sciences. Psychology Life Sciences Medical Microbiology Microbiology Micromonosporaceae - chemistry Micromonosporaceae - classification Micromonosporaceae - genetics Micromonosporaceae - isolation & purification Molecular Sequence Data Nucleic Acid Hybridization Original Paper Phospholipids - analysis Phylogenetics Phylogeny Plant Sciences Ribonucleic acid RNA RNA, Ribosomal, 16S - genetics Sequence Analysis, DNA Soil Microbiology Soil microorganisms Soil Science & Conservation Systematics Taxonomy Vitamin K 2 - analysis Wetlands |
| title | Verrucosispora wenchangensis sp. nov., isolated from mangrove soil |
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