Genome Constitution and Classification Using Retrotransposon-Based Markers in the Orphan Crop Banana
We have exploited the repetitive and dispersed nature of many long terminal repeat (LTR)-retrotransposon families for characterizing genome constitutions and classifying cultivars of the genus Musa. Insertional polymorphisms of the elements were studied using seven published and two newly designed p...
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| Veröffentlicht in: | Journal of plant biology = Singmul Hakhoe chi 2005-03, Vol.48 (1), p.96-105 |
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| container_title | Journal of plant biology = Singmul Hakhoe chi |
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| creator | Teo, Chee How (Universiti Putra Malaysia, Selangor, Malaysia) Tan, Siang Hee (Sime Darby Technology Centre Sdn Bhd, Selangor, Malaysia), E-mail: sianqtsh@simedarby.com Ho, Chai Ling (Universiti Putra Malaysia, Selangor, Malaysia) Faridah, Qamaruz Zaman (Universiti Putra Malaysia, Selangor, Malaysia) Othman, Yasmin Rofina (Universiti Malaya, Kuala Lumpur, Malaysia) Heslop-Harrison, John Seymour (University of Leicester, Leicester, United Kingdom) Kalendar, Ruslan (University of Helsinki, Helsinki, Finland) Schulman, Alan Howard (University of Helsinki, Helsinki, Finland) |
| description | We have exploited the repetitive and dispersed nature of many long terminal repeat (LTR)-retrotransposon families for characterizing genome constitutions and classifying cultivars of the genus Musa. Insertional polymorphisms of the elements were studied using seven published and two newly designed primers facing outwards from the LTRs and reverse transcriptase (RT) domain of the retrotransposon. The primers generated specific amplification patterns showing the universal applicability of this marker type. |
| doi_str_mv | 10.1007/BF03030568 |
| format | Article |
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Insertional polymorphisms of the elements were studied using seven published and two newly designed primers facing outwards from the LTRs and reverse transcriptase (RT) domain of the retrotransposon. The primers generated specific amplification patterns showing the universal applicability of this marker type.</description><identifier>ISSN: 1226-9239</identifier><identifier>EISSN: 1867-0725</identifier><identifier>DOI: 10.1007/BF03030568</identifier><language>eng</language><publisher>Heidelberg: Springer Nature B.V</publisher><subject>Amplification ; Classification ; Cultivars ; Fruits ; Gene polymorphism ; genome constitution ; Genomes ; Genotypes ; Hybrids ; Inter-Retrotransposon Amplified Polymorphism ; Long terminal repeat ; MUSA ; Musa acuminata ; Musa balbisiana ; phylogenetic analysis ; Phylogeny ; Plant breeding ; Polymorphism ; retrotransposon ; RNA-directed DNA polymerase ; Tissue culture</subject><ispartof>Journal of plant biology = Singmul Hakhoe chi, 2005-03, Vol.48 (1), p.96-105</ispartof><rights>The Botanical Society of Korea 2005.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c281t-47598f34f61b76eb847b3828510c9266989641b596d9457583d9be30c1bbc3163</citedby><cites>FETCH-LOGICAL-c281t-47598f34f61b76eb847b3828510c9266989641b596d9457583d9be30c1bbc3163</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://www.proquest.com/docview/2920218934?pq-origsite=primo$$EHTML$$P50$$Gproquest$$H</linktohtml><link.rule.ids>314,776,780,21367,27901,27902,33721,43781</link.rule.ids></links><search><creatorcontrib>Teo, Chee How (Universiti Putra Malaysia, Selangor, Malaysia)</creatorcontrib><creatorcontrib>Tan, Siang Hee (Sime Darby Technology Centre Sdn Bhd, Selangor, Malaysia), E-mail: sianqtsh@simedarby.com</creatorcontrib><creatorcontrib>Ho, Chai Ling (Universiti Putra Malaysia, Selangor, Malaysia)</creatorcontrib><creatorcontrib>Faridah, Qamaruz Zaman (Universiti Putra Malaysia, Selangor, Malaysia)</creatorcontrib><creatorcontrib>Othman, Yasmin Rofina (Universiti Malaya, Kuala Lumpur, Malaysia)</creatorcontrib><creatorcontrib>Heslop-Harrison, John Seymour (University of Leicester, Leicester, United Kingdom)</creatorcontrib><creatorcontrib>Kalendar, Ruslan (University of Helsinki, Helsinki, Finland)</creatorcontrib><creatorcontrib>Schulman, Alan Howard (University of Helsinki, Helsinki, Finland)</creatorcontrib><title>Genome Constitution and Classification Using Retrotransposon-Based Markers in the Orphan Crop Banana</title><title>Journal of plant biology = Singmul Hakhoe chi</title><description>We have exploited the repetitive and dispersed nature of many long terminal repeat (LTR)-retrotransposon families for characterizing genome constitutions and classifying cultivars of the genus Musa. Insertional polymorphisms of the elements were studied using seven published and two newly designed primers facing outwards from the LTRs and reverse transcriptase (RT) domain of the retrotransposon. The primers generated specific amplification patterns showing the universal applicability of this marker type.</description><subject>Amplification</subject><subject>Classification</subject><subject>Cultivars</subject><subject>Fruits</subject><subject>Gene polymorphism</subject><subject>genome constitution</subject><subject>Genomes</subject><subject>Genotypes</subject><subject>Hybrids</subject><subject>Inter-Retrotransposon Amplified Polymorphism</subject><subject>Long terminal repeat</subject><subject>MUSA</subject><subject>Musa acuminata</subject><subject>Musa balbisiana</subject><subject>phylogenetic analysis</subject><subject>Phylogeny</subject><subject>Plant breeding</subject><subject>Polymorphism</subject><subject>retrotransposon</subject><subject>RNA-directed DNA polymerase</subject><subject>Tissue 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| ispartof | Journal of plant biology = Singmul Hakhoe chi, 2005-03, Vol.48 (1), p.96-105 |
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| subjects | Amplification Classification Cultivars Fruits Gene polymorphism genome constitution Genomes Genotypes Hybrids Inter-Retrotransposon Amplified Polymorphism Long terminal repeat MUSA Musa acuminata Musa balbisiana phylogenetic analysis Phylogeny Plant breeding Polymorphism retrotransposon RNA-directed DNA polymerase Tissue culture |
| title | Genome Constitution and Classification Using Retrotransposon-Based Markers in the Orphan Crop Banana |
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