Bioinformatic Analysis of the Transcriptome Profile of Adult Female Angiostrongylus cantonensis
ABSTRACT To perform transcriptional profiling of adult female Angiostrongylus cantonensis, three groups of adult female A. cantonensis were isolated and their mRNA was separated and sequenced through the next-generation sequencing (NGS) technology. Sequencing data were assembled into unigenes and tr...
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| Veröffentlicht in: | Pakistan journal of zoology 2023-06, Vol.55 (3), p.1497 |
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| creator | Guo, Yue Zhang, Hui Wang, Chun Sheng Zhou, Hong Chang |
| description | ABSTRACT To perform transcriptional profiling of adult female Angiostrongylus cantonensis, three groups of adult female A. cantonensis were isolated and their mRNA was separated and sequenced through the next-generation sequencing (NGS) technology. Sequencing data were assembled into unigenes and transcripts. Finally, all unigenes and transcripts were annotated by querying the NR, Gene Ontology (GO), COG and KOG databases.A total of 71047 unigenes and 106652 transcripts were assembled. A. cantonensis was successfully annotated by the NR and GO databases, resulting in 8107 unigenes and 16105 transcripts. Meanwhile, 10422 unigenes and 20974 transcripts were annotated by the COG/KOG databases. ORF querying annotated 10531 unigenes and 28186 transcripts. It could be observed that the unigenes and transcripts associated with metabolism and parasitism of adult female A. cantonensis were highly expressed.In this study, the transcriptome of adult female Angiostrongylus cantonensis was analyzed and successfully annotated. Metabolism and parasitism related genes were highly expressed at adult female A. cantonensis. |
| doi_str_mv | 10.17582/journal.pjz/20220211070241 |
| format | Article |
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Sequencing data were assembled into unigenes and transcripts. Finally, all unigenes and transcripts were annotated by querying the NR, Gene Ontology (GO), COG and KOG databases.A total of 71047 unigenes and 106652 transcripts were assembled. A. cantonensis was successfully annotated by the NR and GO databases, resulting in 8107 unigenes and 16105 transcripts. Meanwhile, 10422 unigenes and 20974 transcripts were annotated by the COG/KOG databases. ORF querying annotated 10531 unigenes and 28186 transcripts. It could be observed that the unigenes and transcripts associated with metabolism and parasitism of adult female A. cantonensis were highly expressed.In this study, the transcriptome of adult female Angiostrongylus cantonensis was analyzed and successfully annotated. Metabolism and parasitism related genes were highly expressed at adult female A. cantonensis.</description><identifier>ISSN: 0030-9923</identifier><identifier>EISSN: 0030-9923</identifier><identifier>DOI: 10.17582/journal.pjz/20220211070241</identifier><language>eng</language><publisher>Lahore: Knowledge Bylanes</publisher><subject>Angiostrongyliasis ; Angiostrongylus cantonensis ; Annotations ; Causes of ; Computational biology ; Conflicts of interest ; Females ; Gene expression ; Metabolism ; Microbiological research ; Next-generation sequencing ; Parasites ; Parasitic diseases ; Parasitism ; Physiology ; Signal transduction ; Transcriptomes</subject><ispartof>Pakistan journal of zoology, 2023-06, Vol.55 (3), p.1497</ispartof><rights>COPYRIGHT 2023 Knowledge Bylanes</rights><rights>(c)2023 Pakistan Journal of Zoology</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Guo, Yue</creatorcontrib><creatorcontrib>Zhang, Hui</creatorcontrib><creatorcontrib>Wang, Chun Sheng</creatorcontrib><creatorcontrib>Zhou, Hong Chang</creatorcontrib><title>Bioinformatic Analysis of the Transcriptome Profile of Adult Female Angiostrongylus cantonensis</title><title>Pakistan journal of zoology</title><description>ABSTRACT To perform transcriptional profiling of adult female Angiostrongylus cantonensis, three groups of adult female A. cantonensis were isolated and their mRNA was separated and sequenced through the next-generation sequencing (NGS) technology. Sequencing data were assembled into unigenes and transcripts. Finally, all unigenes and transcripts were annotated by querying the NR, Gene Ontology (GO), COG and KOG databases.A total of 71047 unigenes and 106652 transcripts were assembled. A. cantonensis was successfully annotated by the NR and GO databases, resulting in 8107 unigenes and 16105 transcripts. Meanwhile, 10422 unigenes and 20974 transcripts were annotated by the COG/KOG databases. ORF querying annotated 10531 unigenes and 28186 transcripts. It could be observed that the unigenes and transcripts associated with metabolism and parasitism of adult female A. cantonensis were highly expressed.In this study, the transcriptome of adult female Angiostrongylus cantonensis was analyzed and successfully annotated. Metabolism and parasitism related genes were highly expressed at adult female A. cantonensis.</description><subject>Angiostrongyliasis</subject><subject>Angiostrongylus cantonensis</subject><subject>Annotations</subject><subject>Causes of</subject><subject>Computational biology</subject><subject>Conflicts of interest</subject><subject>Females</subject><subject>Gene expression</subject><subject>Metabolism</subject><subject>Microbiological research</subject><subject>Next-generation sequencing</subject><subject>Parasites</subject><subject>Parasitic diseases</subject><subject>Parasitism</subject><subject>Physiology</subject><subject>Signal transduction</subject><subject>Transcriptomes</subject><issn>0030-9923</issn><issn>0030-9923</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><recordid>eNptUcFOAyEQJUYTm9p_2KTnbYFdWIintbFqYqKHeiaUZSvNLqxAD_XrpbZGm8iQzBDevMybB8AUwRmqCMPzrdt5K7vZsP2cY4jTRQhWEJfoAowgLGDOOS4u_9TXYBLCFqZTUoIxGwFxZ5yxrfO9jEZldeLbBxMy12bxXWcrL21Q3gzR9Tp79a41nT581s2ui9lS9zK9a7sxLkTv7Gbf7UKmpI3OapuIbsBVK7ugJ6c8Bm_L-9XiMX9-eXha1M-5KgiJOdUEMdJKzVklGw41VgzzNWS6LJTiDSYlpk3RcCnhGpWUUQ4lTZJVq9dc0WIMpkfewbuPnQ5RnLYTBGYEIcIgxb-oTRpbHHRHL1VvghJ1RSFjsEI8oWb_oFI0ujcqCTss4bzh9tigvAvB61YM3vTS7wWC4turn2lE8kqce1V8ASipisI</recordid><startdate>20230630</startdate><enddate>20230630</enddate><creator>Guo, Yue</creator><creator>Zhang, Hui</creator><creator>Wang, Chun Sheng</creator><creator>Zhou, Hong Chang</creator><general>Knowledge Bylanes</general><general>AsiaNet Pakistan (Pvt) Ltd</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7QG</scope><scope>7SS</scope><scope>7XB</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M2P</scope><scope>M7P</scope><scope>P64</scope><scope>PATMY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PYCSY</scope><scope>Q9U</scope><scope>RC3</scope></search><sort><creationdate>20230630</creationdate><title>Bioinformatic Analysis of the Transcriptome Profile of Adult Female Angiostrongylus cantonensis</title><author>Guo, Yue ; Zhang, Hui ; Wang, Chun Sheng ; Zhou, Hong Chang</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c355t-6e5185fae987ad90e2c829b08e43cc9d25426d3d9aa0b1468690a6220cfeb9c63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Angiostrongyliasis</topic><topic>Angiostrongylus cantonensis</topic><topic>Annotations</topic><topic>Causes of</topic><topic>Computational biology</topic><topic>Conflicts of interest</topic><topic>Females</topic><topic>Gene expression</topic><topic>Metabolism</topic><topic>Microbiological research</topic><topic>Next-generation sequencing</topic><topic>Parasites</topic><topic>Parasitic diseases</topic><topic>Parasitism</topic><topic>Physiology</topic><topic>Signal transduction</topic><topic>Transcriptomes</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Guo, Yue</creatorcontrib><creatorcontrib>Zhang, Hui</creatorcontrib><creatorcontrib>Wang, Chun Sheng</creatorcontrib><creatorcontrib>Zhou, Hong Chang</creatorcontrib><collection>CrossRef</collection><collection>Animal Behavior Abstracts</collection><collection>Entomology Abstracts (Full archive)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Science Database</collection><collection>Biological Science Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Environmental Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>Environmental Science Collection</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><jtitle>Pakistan journal of zoology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Guo, Yue</au><au>Zhang, Hui</au><au>Wang, Chun Sheng</au><au>Zhou, Hong Chang</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Bioinformatic Analysis of the Transcriptome Profile of Adult Female Angiostrongylus cantonensis</atitle><jtitle>Pakistan journal of zoology</jtitle><date>2023-06-30</date><risdate>2023</risdate><volume>55</volume><issue>3</issue><spage>1497</spage><pages>1497-</pages><issn>0030-9923</issn><eissn>0030-9923</eissn><abstract>ABSTRACT To perform transcriptional profiling of adult female Angiostrongylus cantonensis, three groups of adult female A. cantonensis were isolated and their mRNA was separated and sequenced through the next-generation sequencing (NGS) technology. Sequencing data were assembled into unigenes and transcripts. Finally, all unigenes and transcripts were annotated by querying the NR, Gene Ontology (GO), COG and KOG databases.A total of 71047 unigenes and 106652 transcripts were assembled. A. cantonensis was successfully annotated by the NR and GO databases, resulting in 8107 unigenes and 16105 transcripts. Meanwhile, 10422 unigenes and 20974 transcripts were annotated by the COG/KOG databases. ORF querying annotated 10531 unigenes and 28186 transcripts. It could be observed that the unigenes and transcripts associated with metabolism and parasitism of adult female A. cantonensis were highly expressed.In this study, the transcriptome of adult female Angiostrongylus cantonensis was analyzed and successfully annotated. Metabolism and parasitism related genes were highly expressed at adult female A. cantonensis.</abstract><cop>Lahore</cop><pub>Knowledge Bylanes</pub><doi>10.17582/journal.pjz/20220211070241</doi><oa>free_for_read</oa></addata></record> |
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| ispartof | Pakistan journal of zoology, 2023-06, Vol.55 (3), p.1497 |
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| language | eng |
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| subjects | Angiostrongyliasis Angiostrongylus cantonensis Annotations Causes of Computational biology Conflicts of interest Females Gene expression Metabolism Microbiological research Next-generation sequencing Parasites Parasitic diseases Parasitism Physiology Signal transduction Transcriptomes |
| title | Bioinformatic Analysis of the Transcriptome Profile of Adult Female Angiostrongylus cantonensis |
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