Construction of single-deletion-correcting DNA codes using CIS codes

We find a method for constructing DNA codes with single-deletion-correcting capability. We first present an explicit algorithm for the construction of the q -ary single-deletion-correcting codes (abbreviated as SDC codes ) using a class of the complementary information set codes (abbreviated as CIS...

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Veröffentlicht in:Designs, codes, and cryptography codes, and cryptography, 2020-12, Vol.88 (12), p.2581-2596
Hauptverfasser: Choi, Whan-Hyuk, Kim, Hyun Jin, Lee, Yoonjin
Format: Artikel
Sprache:eng
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Zusammenfassung:We find a method for constructing DNA codes with single-deletion-correcting capability. We first present an explicit algorithm for the construction of the q -ary single-deletion-correcting codes (abbreviated as SDC codes ) using a class of the complementary information set codes (abbreviated as CIS codes ), where q is a power of a prime. We then show that the encoding/decoding scheme of the CIS codes with single-deletion-correcting capability has a simple deterministic algorithm. Finally, applying our algorithm to the generated DNA codes with appropriate modification, we obtain the DNA codes with single-deletion-correcting capability. We present some various examples of such DNA codes, and we also obtain some lower bounds on the maximum size of the single-deletion-correcting DNA codes.
ISSN:0925-1022
1573-7586
DOI:10.1007/s10623-020-00802-2