The complete mitochondrial genome of Juema pig (Suina:Suidae)
Juema pig ( Suina:Suidae ), a rare, miniature and primitive species, has been living and razing on the Qinghai-Tibet plateau completely wild for thousands of years. Owing to the cold plateau climate, low energy, and low carbohydrate diet, Juema pig has some unique genetic characteristics that differ...
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| Veröffentlicht in: | Conservation genetics resources 2018-09, Vol.10 (3), p.523-525 |
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| creator | Mao, Hongxia Zhao, Guangping Guan, Yunbin Guo, Xian Lamaocao, Zhong |
| description | Juema pig
(
Suina:Suidae
), a rare, miniature and primitive species, has been living and razing on the Qinghai-Tibet plateau completely wild for thousands of years. Owing to the cold plateau climate, low energy, and low carbohydrate diet,
Juema pig
has some unique genetic characteristics that differentiate it from other pig breeds. If the species should not be protected in a timely manner, it would become extinct in the future. In June 2006,
No. 662
announcement
of the People’s Republic ofChina
has included the Tibetan pigs in
the national protection list of poultry genetic resources
. Developing reasonable conservation and utilization measures for
Juema pig
requires deeper understanding of molecular genetics. The complete mitochondrial genome of
Juema pig
was determined in this study. Similar to other vertebrate, the mitogenome is 16,690 bp in length and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a D-loop region. The overall base composition of the H-strand is 34.76% for A, 26.17% for C, 13.24% for G and 25.83% for T. To ensure the sequence is reliable, phylogenetic tree was constructed using MEGA 6 with Neighbor-Joiningmethod (NJ) methods, demonstrating that
Juema pig
was clustered in subfamily
Suina
. |
| doi_str_mv | 10.1007/s12686-017-0865-3 |
| format | Article |
| fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_proquest_journals_2430233318</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2430233318</sourcerecordid><originalsourceid>FETCH-LOGICAL-c316t-c54e8910d81b27aad2e8ce7826f51c8b62c5371bd14aea56570af2e51bddd3ce3</originalsourceid><addsrcrecordid>eNp1kElLAzEUx4MoWJcP4C3gRQ_RLM2i4EGKKwUP1nNIkzftlM5kTGYOfntTRvTk5b3H47_AD6EzRq8Ypfo6M66MIpRpQo2SROyhCTNaE80V3f-9JT9ERzlvKFVGcD5Bd4s1YB-bbgs94Kbuo1_HNqTabfEK2tgAjhV-HaBxuKtX-OJ9qFt3W2ZwcHmCDiq3zXD6s4_Rx-PDYvZM5m9PL7P7OfGCqZ54OQVzw2gwbMm1c4GD8aANV5Vk3iwV91Jotgxs6sBJJTV1FQdZPiEID-IYnY-5XYqfA-TebuKQ2lJp-VRQLoRgpqjYqPIp5pygsl2qG5e-LKN2R8mOlGyhZHeUrCgePnpy0bYrSH_J_5u-Ae8caUQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2430233318</pqid></control><display><type>article</type><title>The complete mitochondrial genome of Juema pig (Suina:Suidae)</title><source>Springer Nature - Complete Springer Journals</source><creator>Mao, Hongxia ; Zhao, Guangping ; Guan, Yunbin ; Guo, Xian ; Lamaocao, Zhong</creator><creatorcontrib>Mao, Hongxia ; Zhao, Guangping ; Guan, Yunbin ; Guo, Xian ; Lamaocao, Zhong</creatorcontrib><description>Juema pig
(
Suina:Suidae
), a rare, miniature and primitive species, has been living and razing on the Qinghai-Tibet plateau completely wild for thousands of years. Owing to the cold plateau climate, low energy, and low carbohydrate diet,
Juema pig
has some unique genetic characteristics that differentiate it from other pig breeds. If the species should not be protected in a timely manner, it would become extinct in the future. In June 2006,
No. 662
announcement
of the People’s Republic ofChina
has included the Tibetan pigs in
the national protection list of poultry genetic resources
. Developing reasonable conservation and utilization measures for
Juema pig
requires deeper understanding of molecular genetics. The complete mitochondrial genome of
Juema pig
was determined in this study. Similar to other vertebrate, the mitogenome is 16,690 bp in length and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a D-loop region. The overall base composition of the H-strand is 34.76% for A, 26.17% for C, 13.24% for G and 25.83% for T. To ensure the sequence is reliable, phylogenetic tree was constructed using MEGA 6 with Neighbor-Joiningmethod (NJ) methods, demonstrating that
Juema pig
was clustered in subfamily
Suina
.</description><identifier>ISSN: 1877-7252</identifier><identifier>EISSN: 1877-7260</identifier><identifier>DOI: 10.1007/s12686-017-0865-3</identifier><language>eng</language><publisher>Dordrecht: Springer Netherlands</publisher><subject>Animal Genetics and Genomics ; Base composition ; Biodiversity ; Biomedical and Life Sciences ; Conservation Biology/Ecology ; Ecology ; Evolutionary Biology ; Genetic resources ; Genomes ; Life Sciences ; Low carbohydrate diet ; Mitochondria ; Nutrient deficiency ; Phylogeny ; Plant Genetics and Genomics ; Protected species ; Rare species ; rRNA ; Suidae ; Technical Note ; Transfer RNA</subject><ispartof>Conservation genetics resources, 2018-09, Vol.10 (3), p.523-525</ispartof><rights>Springer Science+Business Media B.V. 2017</rights><rights>Springer Science+Business Media B.V. 2017.</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c316t-c54e8910d81b27aad2e8ce7826f51c8b62c5371bd14aea56570af2e51bddd3ce3</citedby><cites>FETCH-LOGICAL-c316t-c54e8910d81b27aad2e8ce7826f51c8b62c5371bd14aea56570af2e51bddd3ce3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://link.springer.com/content/pdf/10.1007/s12686-017-0865-3$$EPDF$$P50$$Gspringer$$H</linktopdf><linktohtml>$$Uhttps://link.springer.com/10.1007/s12686-017-0865-3$$EHTML$$P50$$Gspringer$$H</linktohtml><link.rule.ids>314,776,780,27901,27902,41464,42533,51294</link.rule.ids></links><search><creatorcontrib>Mao, Hongxia</creatorcontrib><creatorcontrib>Zhao, Guangping</creatorcontrib><creatorcontrib>Guan, Yunbin</creatorcontrib><creatorcontrib>Guo, Xian</creatorcontrib><creatorcontrib>Lamaocao, Zhong</creatorcontrib><title>The complete mitochondrial genome of Juema pig (Suina:Suidae)</title><title>Conservation genetics resources</title><addtitle>Conservation Genet Resour</addtitle><description>Juema pig
(
Suina:Suidae
), a rare, miniature and primitive species, has been living and razing on the Qinghai-Tibet plateau completely wild for thousands of years. Owing to the cold plateau climate, low energy, and low carbohydrate diet,
Juema pig
has some unique genetic characteristics that differentiate it from other pig breeds. If the species should not be protected in a timely manner, it would become extinct in the future. In June 2006,
No. 662
announcement
of the People’s Republic ofChina
has included the Tibetan pigs in
the national protection list of poultry genetic resources
. Developing reasonable conservation and utilization measures for
Juema pig
requires deeper understanding of molecular genetics. The complete mitochondrial genome of
Juema pig
was determined in this study. Similar to other vertebrate, the mitogenome is 16,690 bp in length and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a D-loop region. The overall base composition of the H-strand is 34.76% for A, 26.17% for C, 13.24% for G and 25.83% for T. To ensure the sequence is reliable, phylogenetic tree was constructed using MEGA 6 with Neighbor-Joiningmethod (NJ) methods, demonstrating that
Juema pig
was clustered in subfamily
Suina
.</description><subject>Animal Genetics and Genomics</subject><subject>Base composition</subject><subject>Biodiversity</subject><subject>Biomedical and Life Sciences</subject><subject>Conservation Biology/Ecology</subject><subject>Ecology</subject><subject>Evolutionary Biology</subject><subject>Genetic resources</subject><subject>Genomes</subject><subject>Life Sciences</subject><subject>Low carbohydrate diet</subject><subject>Mitochondria</subject><subject>Nutrient deficiency</subject><subject>Phylogeny</subject><subject>Plant Genetics and Genomics</subject><subject>Protected species</subject><subject>Rare species</subject><subject>rRNA</subject><subject>Suidae</subject><subject>Technical Note</subject><subject>Transfer RNA</subject><issn>1877-7252</issn><issn>1877-7260</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>BENPR</sourceid><recordid>eNp1kElLAzEUx4MoWJcP4C3gRQ_RLM2i4EGKKwUP1nNIkzftlM5kTGYOfntTRvTk5b3H47_AD6EzRq8Ypfo6M66MIpRpQo2SROyhCTNaE80V3f-9JT9ERzlvKFVGcD5Bd4s1YB-bbgs94Kbuo1_HNqTabfEK2tgAjhV-HaBxuKtX-OJ9qFt3W2ZwcHmCDiq3zXD6s4_Rx-PDYvZM5m9PL7P7OfGCqZ54OQVzw2gwbMm1c4GD8aANV5Vk3iwV91Jotgxs6sBJJTV1FQdZPiEID-IYnY-5XYqfA-TebuKQ2lJp-VRQLoRgpqjYqPIp5pygsl2qG5e-LKN2R8mOlGyhZHeUrCgePnpy0bYrSH_J_5u-Ae8caUQ</recordid><startdate>20180901</startdate><enddate>20180901</enddate><creator>Mao, Hongxia</creator><creator>Zhao, Guangping</creator><creator>Guan, Yunbin</creator><creator>Guo, Xian</creator><creator>Lamaocao, Zhong</creator><general>Springer Netherlands</general><general>Springer Nature B.V</general><scope>AAYXX</scope><scope>CITATION</scope><scope>8FE</scope><scope>8FH</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>GNUQQ</scope><scope>HCIFZ</scope><scope>LK8</scope><scope>M7P</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope></search><sort><creationdate>20180901</creationdate><title>The complete mitochondrial genome of Juema pig (Suina:Suidae)</title><author>Mao, Hongxia ; Zhao, Guangping ; Guan, Yunbin ; Guo, Xian ; Lamaocao, Zhong</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c316t-c54e8910d81b27aad2e8ce7826f51c8b62c5371bd14aea56570af2e51bddd3ce3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Animal Genetics and Genomics</topic><topic>Base composition</topic><topic>Biodiversity</topic><topic>Biomedical and Life Sciences</topic><topic>Conservation Biology/Ecology</topic><topic>Ecology</topic><topic>Evolutionary Biology</topic><topic>Genetic resources</topic><topic>Genomes</topic><topic>Life Sciences</topic><topic>Low carbohydrate diet</topic><topic>Mitochondria</topic><topic>Nutrient deficiency</topic><topic>Phylogeny</topic><topic>Plant Genetics and Genomics</topic><topic>Protected species</topic><topic>Rare species</topic><topic>rRNA</topic><topic>Suidae</topic><topic>Technical Note</topic><topic>Transfer RNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Mao, Hongxia</creatorcontrib><creatorcontrib>Zhao, Guangping</creatorcontrib><creatorcontrib>Guan, Yunbin</creatorcontrib><creatorcontrib>Guo, Xian</creatorcontrib><creatorcontrib>Lamaocao, Zhong</creatorcontrib><collection>CrossRef</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>ProQuest Central Student</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Biological Science Collection</collection><collection>Biological Science Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><jtitle>Conservation genetics resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Mao, Hongxia</au><au>Zhao, Guangping</au><au>Guan, Yunbin</au><au>Guo, Xian</au><au>Lamaocao, Zhong</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>The complete mitochondrial genome of Juema pig (Suina:Suidae)</atitle><jtitle>Conservation genetics resources</jtitle><stitle>Conservation Genet Resour</stitle><date>2018-09-01</date><risdate>2018</risdate><volume>10</volume><issue>3</issue><spage>523</spage><epage>525</epage><pages>523-525</pages><issn>1877-7252</issn><eissn>1877-7260</eissn><abstract>Juema pig
(
Suina:Suidae
), a rare, miniature and primitive species, has been living and razing on the Qinghai-Tibet plateau completely wild for thousands of years. Owing to the cold plateau climate, low energy, and low carbohydrate diet,
Juema pig
has some unique genetic characteristics that differentiate it from other pig breeds. If the species should not be protected in a timely manner, it would become extinct in the future. In June 2006,
No. 662
announcement
of the People’s Republic ofChina
has included the Tibetan pigs in
the national protection list of poultry genetic resources
. Developing reasonable conservation and utilization measures for
Juema pig
requires deeper understanding of molecular genetics. The complete mitochondrial genome of
Juema pig
was determined in this study. Similar to other vertebrate, the mitogenome is 16,690 bp in length and contains 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes and a D-loop region. The overall base composition of the H-strand is 34.76% for A, 26.17% for C, 13.24% for G and 25.83% for T. To ensure the sequence is reliable, phylogenetic tree was constructed using MEGA 6 with Neighbor-Joiningmethod (NJ) methods, demonstrating that
Juema pig
was clustered in subfamily
Suina
.</abstract><cop>Dordrecht</cop><pub>Springer Netherlands</pub><doi>10.1007/s12686-017-0865-3</doi><tpages>3</tpages></addata></record> |
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| source | Springer Nature - Complete Springer Journals |
| subjects | Animal Genetics and Genomics Base composition Biodiversity Biomedical and Life Sciences Conservation Biology/Ecology Ecology Evolutionary Biology Genetic resources Genomes Life Sciences Low carbohydrate diet Mitochondria Nutrient deficiency Phylogeny Plant Genetics and Genomics Protected species Rare species rRNA Suidae Technical Note Transfer RNA |
| title | The complete mitochondrial genome of Juema pig (Suina:Suidae) |
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