Plankton community and copepod production in a temperate coastal lagoon: What is changing in a short temporal scale?

Coastal lagoons are often exposed to intense short-term environmental changes and strong anthropogenic pressures influencing zooplanktonic communities and production. However, most works focus on long-term temporal scales using monthly or seasonal sampling strategies. The present study analysed the structure of the mesozooplanktonic assemblages, the production (egg production rates) and physiological condition (RNA:DNA ratio) of the copepod Acartia clausi in a temperate coastal lagoon (Ria Formosa) during the summer, using an intensive sampling approach. Salinity was the main factor affecting the short-term variability of mesozooplankton composition, followed by tidal phase (ebb tides) and semilunar cycle (spring tides). There was a positive relationship between the abundance of Appendicularia and the cladoceran Penilia avirostris with the toxic dinoflagellate Gymnodinium catenatum, suggesting no deleterious effects. The egg production rate of A. clausi was influenced by salinity and ammonia concentration, with a positive correlation between the egg productivity and the macronutrient, showing a possible adaptation of this calanoid species. The RNA:DNA index was positively related to egg production rate, suggesting that it is a good proxy for the reproductive output of copepods, even in short-term periods. This study shows that different timescales need to be included in regular monitoring of planktonic assemblages in coastal lagoons in order to understand the influence of environmental and anthropogenic variables on marine organisms. •Salinity is the main influence on the zooplanktonic community and production.•Tidal phase, temperature and food important in shaping zooplanktonic communities.•RNA:DNA ratio is a good proxy of copepod egg production rate.•Different timescales should be used in regular monitoring of planktonic assemblages.