The complete chloroplast genome sequence of Litsea garrettii

The complete chloroplast genome sequence of Litsea garrettii

The first complete chloroplast genome (cpDNA) sequence of Litsea garrettii was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,011 bp in length, contains a large single-copy region (LSC) of 93,697 bp and a small single-copy region (SSC) of 18,826 bp, which wer...

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Veröffentlicht in:Mitochondrial DNA. Part B. Resources 2020-01, Vol.5 (1), p.1105-1106
Hauptverfasser: Qiu, Qiong, Yang, Dejun, Xu, Linhong, Xu, Yumei, Wang, Yi
Format: Artikel
Sprache:eng
Schlagworte:
chloroplast
Chloroplasts
Genomes
Illumina sequencing
Inverted repeat
Litsea
Litsea garrettii
Mitogenome Announcement
Nucleotide sequence
phylogenetic analysis
rRNA
Transfer RNA
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Zusammenfassung:The first complete chloroplast genome (cpDNA) sequence of Litsea garrettii was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 154,011 bp in length, contains a large single-copy region (LSC) of 93,697 bp and a small single-copy region (SSC) of 18,826 bp, which were separated by a pair of inverted repeat (IR) regions of 20,744 bp. The genome contains 127 genes, including 82 protein-coding genes, 8 ribosomal RNA genes, and 36 transfer RNA genes. Further phylogenomic analysis showed that L. garrettii and Parasassafras confertiflorum clustered in a clade in Lauraceae family.
ISSN:2380-2359
2380-2359
DOI:10.1080/23802359.2020.1726225