Social but lonely: Species delimitation of social voles and the evolutionary history of the only Microtus species living in Africa

The social vole of Cyrenaica, Libya, is the only extant representative of the Cricetidae family found in Africa. Its taxonomic status has been under debate, partly due to the problematic systematics of the entire group of social voles and partly due to the lack of morphological and molecular data from Cyrenaican specimens. In this study, we applied ancient DNA protocols to produce three cytochrome b (cytb) sequences of Cyrenaican voles and built a phylogenetic reconstruction (195 sequences in total) incorporating all available cytb sequences of the remaining social voles, other representatives of the genus Microtus and closely related cricetids. We used this phylogeny to test the performance of the model‐based, single‐locus, species delimitation approach implemented in mPTP and delimited nine species of social voles. Among them are the Cyrenaican vole, Microtus mustersi and its sister species M. guentheri, distributed along the Mediterranean coasts of southwestern Asia. Biogeographical reconstruction of ancestral area and molecular clock estimations of the time since the divergence of the two sister lineages suggest that their common ancestor dispersed into Africa through a coastal route and was isolated in Cyrenaica as a result of population fragmentation associated with Middle Pleistocenic pluvial/interpluvial cycles. Geographic isolation triggered the speciation process, but species distribution modeling gave evidence of subsequent niche divergence; M. guentheri has adapted to the xeric conditions of its distributional area, while M. mustersi benefited from the milder Cyrenaican climate. The Cyrenaican vole is a relict species more than 200,000 years old, has a small and isolated distribution and probably merits conservation. The Cyrenaican vole has an uncertain taxonomic status due to the problematic systematics of the entire group of social voles. Here, we re‐built the social‐vole phylogeny and delimited nine species, including the Cyrenaican Microtus mustersi and its sister species M. guentheri. Their common ancestor dispersed into Cyrenaica through a coastal Mediterranean route and was isolated there for more than 200,000 years, leading to niche divergence; M. mustersi benefited from the milder Cyrenaican climate, while M. guentheri adapted to more xeric conditions.