HAT: Hypergraph analysis toolbox

HAT: Hypergraph analysis toolbox

Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions....

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Veröffentlicht in:PLoS computational biology 2023-06, Vol.19 (6), p.e1011190-e1011190
Hauptverfasser: Pickard, Joshua, Chen, Can, Salman, Rahmy, Stansbury, Cooper, Kim, Sion, Surana, Amit, Bloch, Anthony, Rajapakse, Indika
Format: Artikel
Sprache:eng
Schlagworte:
Analysis
Biology and Life Sciences
Chromosomes
Complex systems
Computer and Information Sciences
Computer programs
Conformation
Engineering and Technology
Genomes
Graph theory
Methods
Physical Sciences
Science
Science Policy
Similarity measures
Social networks
Software
Visualization
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Beschreibung
Zusammenfassung:Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.
ISSN:1553-7358
1553-734X
1553-7358
DOI:10.1371/journal.pcbi.1011190