Predictive modeling for odor character of a chemical using machine learning combined with natural language processing
Recent studies on machine learning technology have reported successful performances in some visual and auditory recognition tasks, while little has been reported in the field of olfaction. In this paper we report computational methods to predict the odor impression of a chemical from its physicochem...
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description | Recent studies on machine learning technology have reported successful performances in some visual and auditory recognition tasks, while little has been reported in the field of olfaction. In this paper we report computational methods to predict the odor impression of a chemical from its physicochemical properties. Our predictive model utilizes nonlinear dimensionality reduction on mass spectra data and performs the clustering of descriptors by natural language processing. Sensory evaluation is widely used to measure human impressions to smell or taste by using verbal descriptors, such as "spicy" and "sweet". However, as it requires significant amounts of time and human resources, a large-scale sensory evaluation test is difficult to perform. Our model successfully predicts a group of descriptors for a target chemical through a series of computer simulations. Although the training text data used in the language modeling is not specialized for olfaction, the experimental results show that our method is useful for analyzing sensory datasets. This is the first report to combine machine olfaction with natural language processing for odor character prediction. |
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In this paper we report computational methods to predict the odor impression of a chemical from its physicochemical properties. Our predictive model utilizes nonlinear dimensionality reduction on mass spectra data and performs the clustering of descriptors by natural language processing. Sensory evaluation is widely used to measure human impressions to smell or taste by using verbal descriptors, such as "spicy" and "sweet". However, as it requires significant amounts of time and human resources, a large-scale sensory evaluation test is difficult to perform. Our model successfully predicts a group of descriptors for a target chemical through a series of computer simulations. Although the training text data used in the language modeling is not specialized for olfaction, the experimental results show that our method is useful for analyzing sensory datasets. This is the first report to combine machine olfaction with natural language processing for odor character prediction.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0198475</identifier><identifier>PMID: 29902194</identifier><language>eng</language><publisher>United States: Public Library of Science</publisher><subject>Analysis ; Auditory tasks ; Biology and Life Sciences ; Chemicals ; Chemistry ; Clustering ; Computer and Information Sciences ; Computer applications ; Computer simulation ; Databases, Chemical ; Datasets ; Human resources ; Humans ; Information processing ; Language ; Learning algorithms ; Machine Learning ; Mass spectra ; Mathematical models ; Models, Theoretical ; Natural Language Processing ; Neural networks ; Odor ; Odorants ; Odors ; Olfaction ; Organic chemistry ; Physical Sciences ; Physicochemical properties ; Prediction models ; Research and Analysis Methods ; Sensory evaluation ; Sensory integration ; Smell ; Smell - physiology ; Social Sciences ; Sweet taste ; Taste ; Visual tasks</subject><ispartof>PloS one, 2018-06, Vol.13 (6), p.e0198475-e0198475</ispartof><rights>COPYRIGHT 2018 Public Library of Science</rights><rights>2018 Nozaki, Nakamoto. This is an open access article distributed under the terms of the Creative Commons Attribution License: http://creativecommons.org/licenses/by/4.0/ (the “License”), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2018 Nozaki, Nakamoto 2018 Nozaki, Nakamoto</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c692t-6a06da8049cf425714d698bb2ac6100c14b501c73ea5087819dbe89f518789a13</citedby><cites>FETCH-LOGICAL-c692t-6a06da8049cf425714d698bb2ac6100c14b501c73ea5087819dbe89f518789a13</cites><orcidid>0000-0002-0599-226X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002022/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC6002022/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2095,2914,23846,27903,27904,53770,53772,79347,79348</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29902194$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><contributor>Matsunami, Hiroaki</contributor><creatorcontrib>Nozaki, Yuji</creatorcontrib><creatorcontrib>Nakamoto, Takamichi</creatorcontrib><title>Predictive modeling for odor character of a chemical using machine learning combined with natural language processing</title><title>PloS one</title><addtitle>PLoS One</addtitle><description>Recent studies on machine learning technology have reported successful performances in some visual and auditory recognition tasks, while little has been reported in the field of olfaction. In this paper we report computational methods to predict the odor impression of a chemical from its physicochemical properties. Our predictive model utilizes nonlinear dimensionality reduction on mass spectra data and performs the clustering of descriptors by natural language processing. Sensory evaluation is widely used to measure human impressions to smell or taste by using verbal descriptors, such as "spicy" and "sweet". However, as it requires significant amounts of time and human resources, a large-scale sensory evaluation test is difficult to perform. Our model successfully predicts a group of descriptors for a target chemical through a series of computer simulations. Although the training text data used in the language modeling is not specialized for olfaction, the experimental results show that our method is useful for analyzing sensory datasets. 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Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Nozaki, Yuji</au><au>Nakamoto, Takamichi</au><au>Matsunami, Hiroaki</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Predictive modeling for odor character of a chemical using machine learning combined with natural language processing</atitle><jtitle>PloS one</jtitle><addtitle>PLoS One</addtitle><date>2018-06-14</date><risdate>2018</risdate><volume>13</volume><issue>6</issue><spage>e0198475</spage><epage>e0198475</epage><pages>e0198475-e0198475</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Recent studies on machine learning technology have reported successful performances in some visual and auditory recognition tasks, while little has been reported in the field of olfaction. In this paper we report computational methods to predict the odor impression of a chemical from its physicochemical properties. Our predictive model utilizes nonlinear dimensionality reduction on mass spectra data and performs the clustering of descriptors by natural language processing. Sensory evaluation is widely used to measure human impressions to smell or taste by using verbal descriptors, such as "spicy" and "sweet". However, as it requires significant amounts of time and human resources, a large-scale sensory evaluation test is difficult to perform. Our model successfully predicts a group of descriptors for a target chemical through a series of computer simulations. Although the training text data used in the language modeling is not specialized for olfaction, the experimental results show that our method is useful for analyzing sensory datasets. This is the first report to combine machine olfaction with natural language processing for odor character prediction.</abstract><cop>United States</cop><pub>Public Library of Science</pub><pmid>29902194</pmid><doi>10.1371/journal.pone.0198475</doi><tpages>e0198475</tpages><orcidid>https://orcid.org/0000-0002-0599-226X</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Analysis Auditory tasks Biology and Life Sciences Chemicals Chemistry Clustering Computer and Information Sciences Computer applications Computer simulation Databases, Chemical Datasets Human resources Humans Information processing Language Learning algorithms Machine Learning Mass spectra Mathematical models Models, Theoretical Natural Language Processing Neural networks Odor Odorants Odors Olfaction Organic chemistry Physical Sciences Physicochemical properties Prediction models Research and Analysis Methods Sensory evaluation Sensory integration Smell Smell - physiology Social Sciences Sweet taste Taste Visual tasks |
title | Predictive modeling for odor character of a chemical using machine learning combined with natural language processing |
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