A reappraisal of how to build modular, reusable models of biological systems
[...]biological information from a new experiment may raise the importance of a variable hidden within a component. [...]it becomes difficult to anticipate what information in a component should be exposed or hidden by an interface.\n For example, while one annotator may refer to the concept "...
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Veröffentlicht in: | PLoS computational biology 2014-10, Vol.10 (10), p.e1003849-e1003849 |
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Format: | Artikel |
Sprache: | eng |
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[...]biological information from a new experiment may raise the importance of a variable hidden within a component. [...]it becomes difficult to anticipate what information in a component should be exposed or hidden by an interface.\n For example, while one annotator may refer to the concept "D-glucose" from the ChEBI knowledge base [19], another may refer to the term "Glucose" from the Systematized Nomenclature of Medicine--Clinical Terms resource (SNOMED-CT [20]). [...]critical challenges for SAIM modeling include incentivizing model curators to annotate at this level of detail and developing intuitive software that minimizes annotation costs. |
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ISSN: | 1553-7358 1553-734X 1553-7358 |
DOI: | 10.1371/journal.pcbi.1003849 |