Automated querying of genome databases

Automated querying of genome databases

[...]both the UCSC and Ensembl Genome Browsers include tools for direct and automated "batch"-querying of their underlying databases. [...]as Web-based interfaces like Galaxy--which provide batch data acquisition and post-processing, but do not require programming--evolve, the powerful too...

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Veröffentlicht in:PLoS computational biology 2007-01, Vol.3 (1), p.e1-e1
1. Verfasser: Schattner, Peter
Format: Artikel
Sprache:eng
Schlagworte:
Algorithms
Automation
Biology
Chromosome Mapping - methods
Colleges & universities
Database Management Systems
Databases, Genetic
Education
Genealogical libraries
Genes
Genomes
Genomics
Information management
Information Storage and Retrieval - methods
Methods
Molecular biology
Query processing
Sequence Analysis, DNA - methods
Services
Software
User-Computer Interface
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Beschreibung
Zusammenfassung:[...]both the UCSC and Ensembl Genome Browsers include tools for direct and automated "batch"-querying of their underlying databases. [...]as Web-based interfaces like Galaxy--which provide batch data acquisition and post-processing, but do not require programming--evolve, the powerful tools of genome-wide data analysis should become accessible to an ever wider range of biologists.
ISSN:1553-7358
1553-734X
1553-7358
DOI:10.1371/journal.pcbi.0030001