Characterization of a Novel P[25],G11 Human Group A Rotavirus

A novel rotavirus strain (Dhaka6) isolated from a 21-year-old Bangladeshi male patient was characterized by sequence analysis of its VP7 and VP4 gene segments. Phylogenetic analysis of the VP7 gene of the Dhaka6 strain revealed a common evolutionary lineage with porcine G11 rotavirus strains. This i...

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Veröffentlicht in:Journal of Clinical Microbiology 2005-07, Vol.43 (7), p.3208-3212
Hauptverfasser: Rahman, Mustafizur, Matthijnssens, Jelle, Nahar, Sharifun, Podder, Goutam, Sack, David A, Azim, Tasnim, Van Ranst, Marc
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Sprache:eng
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Zusammenfassung:A novel rotavirus strain (Dhaka6) isolated from a 21-year-old Bangladeshi male patient was characterized by sequence analysis of its VP7 and VP4 gene segments. Phylogenetic analysis of the VP7 gene of the Dhaka6 strain revealed a common evolutionary lineage with porcine G11 rotavirus strains. This isolate is the first reported G11 rotavirus strain infecting a human host. Comparison of the VP4 gene sequences with all currently recognized 24 different P genotypes revealed only low nucleotide (54 to 71%) and amino acid (52 to 76%) sequence identities. This lack of high sequence similarity in the VP4 gene indicates that the Dhaka6 isolate represents a new group A rotavirus P genotype, to which we propose assignment of the designation P[25].
ISSN:0095-1137
1098-660X
DOI:10.1128/jcm.43.7.3208-3212.2005