Interaction of the replication terminator protein of Bacillus subtilis with DNA probed by NMR spectroscopy
Termination of DNA replication in Bacillus subtilis involves the polar arrest of replication forks by a specific complex formed between the dimeric 29 kDa replication terminator protein (RTP) and DNA terminator sites. We have used NMR spectroscopy to probe the changes in 1H– 15N correlation spectra...
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Veröffentlicht in: | Biochemical and biophysical research communications 2005-09, Vol.335 (2), p.361-366 |
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Format: | Artikel |
Sprache: | eng |
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Zusammenfassung: | Termination of DNA replication in
Bacillus subtilis involves the polar arrest of replication forks by a specific complex formed between the dimeric 29
kDa replication terminator protein (RTP) and DNA terminator sites. We have used NMR spectroscopy to probe the changes in
1H–
15N correlation spectra of a
15N-labelled RTP.C110S mutant upon the addition of a 21 base pair symmetrical DNA binding site. Assignment of the
1H–
15N correlations was achieved using a suite of triple resonance NMR experiments with
15N,
13C,70%
2H enriched protein recorded at 800
MHz and using TROSY pulse sequences. Perturbations to
1H–
15N spectra revealed that the N-termini, α3-helices and several loops are affected by the binding interaction. An analysis of this data in light of the crystallographically determined apo- and DNA-bound forms of RTP.C110S revealed that the NMR spectral perturbations correlate more closely to protein structural changes upon complex formation rather than to interactions at the protein–DNA interface. |
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ISSN: | 0006-291X 1090-2104 |
DOI: | 10.1016/j.bbrc.2005.07.082 |