Solving the puzzle of Fe homeostasis by integrating molecular, mathematical, and societal models
To ensure optimal utilization and bioavailability, iron uptake, transport, subcellular localization, and assimilation are tightly regulated in plants. Herein, we examine recent advances in our understanding of cellular responses to Fe deficiency. We then use intracellular mechanisms of Fe homeostasi...
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Veröffentlicht in: | Current opinion in plant biology 2021-12, Vol.64 (C), p.102149-102149, Article 102149 |
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Format: | Artikel |
Sprache: | eng |
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Zusammenfassung: | To ensure optimal utilization and bioavailability, iron uptake, transport, subcellular localization, and assimilation are tightly regulated in plants. Herein, we examine recent advances in our understanding of cellular responses to Fe deficiency. We then use intracellular mechanisms of Fe homeostasis to discuss how formalizing cell biology knowledge via a mathematical model can advance discovery even when quantitative data is limited. Using simulation-based inference to identify plausible systems mechanisms that conform to known emergent phenotypes can yield novel, testable hypotheses to guide targeted experiments. However, this approach relies on the accurate encoding of domain-expert knowledge in exploratory mathematical models. We argue that this would be facilitated by fostering more “systems thinking” life scientists and that diversifying your research team may be a practical path to achieve that goal.
•Recent studies highlight the complexity of cellular responses to iron deficiency.•Simulation-based inference (SBI) is an approach that can help shed light on stress responses by formally integrating prior knowledge and new data.•Collaborative application of SBI to biology requires effective communication, which is the cornerstone of inclusion in science and beyond. |
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ISSN: | 1369-5266 1879-0356 |
DOI: | 10.1016/j.pbi.2021.102149 |