High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain
Abstract Ensifer meliloti Mlalz-1 (INSDC = ATZD00000000 ) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing nodule of Medicago laciniata (L.) Miller from a soil sample collected near the town of Guatiza on the island of Lanzarote, the...
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creator | Osman, Wan Adnawani Meor van Berkum, Peter León-Barrios, Milagros Velázquez, Encarna Elia, Patrick Tian, Rui Ardley, Julie Gollagher, Margaret Seshadri, Rekha Reddy, T. B. K. Ivanova, Natalia Woyke, Tanja Pati, Amrita Markowitz, Victor Baeshen, Mohamed N. Baeshen, Naseebh Nabeeh Kyrpides, Nikos Reeve, Wayne |
description | Abstract
Ensifer meliloti
Mlalz-1 (INSDC =
ATZD00000000
) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing nodule of
Medicago laciniata
(L.) Miller from a soil sample collected near the town of Guatiza on the island of Lanzarote, the Canary Islands, Spain. This strain nodulates and forms an effective symbiosis with the highly specific host
M. laciniata
. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) sequencing project. Here the features of
E. meliloti
Mlalz-1 are described, together with high-quality permanent draft genome sequence information and annotation. The 6,664,116 bp high-quality draft genome is arranged in 99 scaffolds of 100 contigs, containing 6314 protein-coding genes and 74 RNA-only encoding genes. Strain Mlalz-1 is closely related to
Ensifer meliloti
IAM 12611
T
,
Ensifer medicae
A 321
T
and
Ensifer numidicus
ORS 1407
T
, based on 16S rRNA gene sequences. gANI values of ≥98.1% support the classification of strain Mlalz-1 as
E. meliloti
. Nodulation of
M. laciniata
requires a specific
nodC
allele, and the
nodC
gene of strain Mlalz-1 shares ≥98% sequence identity with
nodC
of
M. laciniata
-nodulating
Ensifer
strains, but ≤93% with
nodC
of
Ensifer
strains that nodulate other
Medicago
species. Strain Mlalz-1 is unique among sequenced |
format | Article |
fullrecord | <record><control><sourceid>osti</sourceid><recordid>TN_cdi_osti_scitechconnect_1618971</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1618971</sourcerecordid><originalsourceid>FETCH-osti_scitechconnect_16189713</originalsourceid><addsrcrecordid>eNqNjMFKw0AQhhdRsGjfYfCkkIhrgjHnUqnQnvRexs0kHZnM2t3tIX0ZX9UVPHjsf_n-w8d3Zma2reuyemya83__0sxj_HzIq9qmrduZ-V7xsCv3BxROE3QB-wQDqR8JIu0PpI7A97DUyD0FGElYfGLYCMqxtAUgjOyCj9P4wV7Tr7yhjh0OHgQdK2NCuF3f32VRJDecz3CJOmCFNeoRg09UwAIVwwSvUVC7WMDbF7Jem4seJdL8j1fm5mX5vliVPibeRseJ3M551Vzc2if73Da2Okn6ARtRXJ4</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain</title><source>DOAJ Directory of Open Access Journals</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><source>PubMed Central Open Access</source><creator>Osman, Wan Adnawani Meor ; van Berkum, Peter ; León-Barrios, Milagros ; Velázquez, Encarna ; Elia, Patrick ; Tian, Rui ; Ardley, Julie ; Gollagher, Margaret ; Seshadri, Rekha ; Reddy, T. B. K. ; Ivanova, Natalia ; Woyke, Tanja ; Pati, Amrita ; Markowitz, Victor ; Baeshen, Mohamed N. ; Baeshen, Naseebh Nabeeh ; Kyrpides, Nikos ; Reeve, Wayne</creator><creatorcontrib>Osman, Wan Adnawani Meor ; van Berkum, Peter ; León-Barrios, Milagros ; Velázquez, Encarna ; Elia, Patrick ; Tian, Rui ; Ardley, Julie ; Gollagher, Margaret ; Seshadri, Rekha ; Reddy, T. B. K. ; Ivanova, Natalia ; Woyke, Tanja ; Pati, Amrita ; Markowitz, Victor ; Baeshen, Mohamed N. ; Baeshen, Naseebh Nabeeh ; Kyrpides, Nikos ; Reeve, Wayne ; Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)</creatorcontrib><description><![CDATA[Abstract
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
Ensifer meliloti
</ext-link>
Mlalz-1 (INSDC =
<ext-link ext-link-type='uri' href='https://www.ncbi.nlm.nih.gov/nuccore/ATZD00000000'>ATZD00000000</ext-link>
) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing nodule of
<ext-link ext-link-type='uri' href='http://www.theplantlist.org/tpl1.1/record/ild-8512'>
Medicago laciniata
</ext-link>
(L.) Miller from a soil sample collected near the town of Guatiza on the island of Lanzarote, the Canary Islands, Spain. This strain nodulates and forms an effective symbiosis with the highly specific host
M. laciniata
. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) sequencing project. Here the features of
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
Mlalz-1 are described, together with high-quality permanent draft genome sequence information and annotation. The 6,664,116 bp high-quality draft genome is arranged in 99 scaffolds of 100 contigs, containing 6314 protein-coding genes and 74 RNA-only encoding genes. Strain Mlalz-1 is closely related to
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
Ensifer meliloti
</ext-link>
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DIAM+12611'>IAM 12611</ext-link>
T
,
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
Ensifer medicae
</ext-link>
A 321
T
and
<ext-link ext-link-type='doi' href='10.1601/nm.17831'>
Ensifer numidicus
</ext-link>
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DORS+1407'>ORS 1407</ext-link>
T
, based on 16S rRNA gene sequences. gANI values of ≥98.1% support the classification of strain Mlalz-1 as
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
. Nodulation of
M. laciniata
requires a specific
nodC
allele, and the
nodC
gene of strain Mlalz-1 shares ≥98% sequence identity with
nodC
of
M. laciniata
-nodulating
<ext-link ext-link-type='doi' href='10.1601/nm.1328'>
Ensifer
</ext-link>
strains, but ≤93% with
nodC
of
<ext-link ext-link-type='doi' href='10.1601/nm.1328'>
Ensifer
</ext-link>
strains that nodulate other
<ext-link ext-link-type='uri' href='http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=3877'>
Medicago
</ext-link>
species. Strain Mlalz-1 is unique among sequenced
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
strains in possessing genes encoding components of a T2SS and in having two versions of the adaptive acid tolerance response
lpiA-acvB
operon. In
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
strain
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DWSM+419'>WSM419</ext-link>
,
lpiA
is essential for enhancing survival in lethal acid conditions. The second copy of the
lpiA-acvB
operon of strain Mlalz-1 has highest sequence identity (> 96%) with that of
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
strains, which suggests genetic recombination between strain Mlalz-1 and
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
and the horizontal gene transfer of
lpiA-acvB
.]]></description><identifier>ISSN: 1944-3277</identifier><identifier>EISSN: 1944-3277</identifier><language>eng</language><publisher>United Kingdom: Springer Science + Business Media</publisher><subject>60 APPLIED LIFE SCIENCES ; BASIC BIOLOGICAL SCIENCES ; Ensifer ; Geba-Rnb ; lpiA-acvB operon ; Medicago ; Root-nodule bacteria</subject><ispartof>Standards in genomic sciences, 2017-09, Vol.12 (1)</ispartof><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>000000019938606X</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>230,314,776,780,881</link.rule.ids><backlink>$$Uhttps://www.osti.gov/biblio/1618971$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Osman, Wan Adnawani Meor</creatorcontrib><creatorcontrib>van Berkum, Peter</creatorcontrib><creatorcontrib>León-Barrios, Milagros</creatorcontrib><creatorcontrib>Velázquez, Encarna</creatorcontrib><creatorcontrib>Elia, Patrick</creatorcontrib><creatorcontrib>Tian, Rui</creatorcontrib><creatorcontrib>Ardley, Julie</creatorcontrib><creatorcontrib>Gollagher, Margaret</creatorcontrib><creatorcontrib>Seshadri, Rekha</creatorcontrib><creatorcontrib>Reddy, T. B. K.</creatorcontrib><creatorcontrib>Ivanova, Natalia</creatorcontrib><creatorcontrib>Woyke, Tanja</creatorcontrib><creatorcontrib>Pati, Amrita</creatorcontrib><creatorcontrib>Markowitz, Victor</creatorcontrib><creatorcontrib>Baeshen, Mohamed N.</creatorcontrib><creatorcontrib>Baeshen, Naseebh Nabeeh</creatorcontrib><creatorcontrib>Kyrpides, Nikos</creatorcontrib><creatorcontrib>Reeve, Wayne</creatorcontrib><creatorcontrib>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)</creatorcontrib><title>High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain</title><title>Standards in genomic sciences</title><description><![CDATA[Abstract
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
Ensifer meliloti
</ext-link>
Mlalz-1 (INSDC =
<ext-link ext-link-type='uri' href='https://www.ncbi.nlm.nih.gov/nuccore/ATZD00000000'>ATZD00000000</ext-link>
) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing nodule of
<ext-link ext-link-type='uri' href='http://www.theplantlist.org/tpl1.1/record/ild-8512'>
Medicago laciniata
</ext-link>
(L.) Miller from a soil sample collected near the town of Guatiza on the island of Lanzarote, the Canary Islands, Spain. This strain nodulates and forms an effective symbiosis with the highly specific host
M. laciniata
. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) sequencing project. Here the features of
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
Mlalz-1 are described, together with high-quality permanent draft genome sequence information and annotation. The 6,664,116 bp high-quality draft genome is arranged in 99 scaffolds of 100 contigs, containing 6314 protein-coding genes and 74 RNA-only encoding genes. Strain Mlalz-1 is closely related to
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
Ensifer meliloti
</ext-link>
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DIAM+12611'>IAM 12611</ext-link>
T
,
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
Ensifer medicae
</ext-link>
A 321
T
and
<ext-link ext-link-type='doi' href='10.1601/nm.17831'>
Ensifer numidicus
</ext-link>
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DORS+1407'>ORS 1407</ext-link>
T
, based on 16S rRNA gene sequences. gANI values of ≥98.1% support the classification of strain Mlalz-1 as
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
. Nodulation of
M. laciniata
requires a specific
nodC
allele, and the
nodC
gene of strain Mlalz-1 shares ≥98% sequence identity with
nodC
of
M. laciniata
-nodulating
<ext-link ext-link-type='doi' href='10.1601/nm.1328'>
Ensifer
</ext-link>
strains, but ≤93% with
nodC
of
<ext-link ext-link-type='doi' href='10.1601/nm.1328'>
Ensifer
</ext-link>
strains that nodulate other
<ext-link ext-link-type='uri' href='http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=3877'>
Medicago
</ext-link>
species. Strain Mlalz-1 is unique among sequenced
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
strains in possessing genes encoding components of a T2SS and in having two versions of the adaptive acid tolerance response
lpiA-acvB
operon. In
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
strain
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DWSM+419'>WSM419</ext-link>
,
lpiA
is essential for enhancing survival in lethal acid conditions. The second copy of the
lpiA-acvB
operon of strain Mlalz-1 has highest sequence identity (> 96%) with that of
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
strains, which suggests genetic recombination between strain Mlalz-1 and
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
and the horizontal gene transfer of
lpiA-acvB
.]]></description><subject>60 APPLIED LIFE SCIENCES</subject><subject>BASIC BIOLOGICAL SCIENCES</subject><subject>Ensifer</subject><subject>Geba-Rnb</subject><subject>lpiA-acvB operon</subject><subject>Medicago</subject><subject>Root-nodule bacteria</subject><issn>1944-3277</issn><issn>1944-3277</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNqNjMFKw0AQhhdRsGjfYfCkkIhrgjHnUqnQnvRexs0kHZnM2t3tIX0ZX9UVPHjsf_n-w8d3Zma2reuyemya83__0sxj_HzIq9qmrduZ-V7xsCv3BxROE3QB-wQDqR8JIu0PpI7A97DUyD0FGElYfGLYCMqxtAUgjOyCj9P4wV7Tr7yhjh0OHgQdK2NCuF3f32VRJDecz3CJOmCFNeoRg09UwAIVwwSvUVC7WMDbF7Jem4seJdL8j1fm5mX5vliVPibeRseJ3M551Vzc2if73Da2Okn6ARtRXJ4</recordid><startdate>20170925</startdate><enddate>20170925</enddate><creator>Osman, Wan Adnawani Meor</creator><creator>van Berkum, Peter</creator><creator>León-Barrios, Milagros</creator><creator>Velázquez, Encarna</creator><creator>Elia, Patrick</creator><creator>Tian, Rui</creator><creator>Ardley, Julie</creator><creator>Gollagher, Margaret</creator><creator>Seshadri, Rekha</creator><creator>Reddy, T. B. K.</creator><creator>Ivanova, Natalia</creator><creator>Woyke, Tanja</creator><creator>Pati, Amrita</creator><creator>Markowitz, Victor</creator><creator>Baeshen, Mohamed N.</creator><creator>Baeshen, Naseebh Nabeeh</creator><creator>Kyrpides, Nikos</creator><creator>Reeve, Wayne</creator><general>Springer Science + Business Media</general><scope>OTOTI</scope><orcidid>https://orcid.org/000000019938606X</orcidid></search><sort><creationdate>20170925</creationdate><title>High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain</title><author>Osman, Wan Adnawani Meor ; van Berkum, Peter ; León-Barrios, Milagros ; Velázquez, Encarna ; Elia, Patrick ; Tian, Rui ; Ardley, Julie ; Gollagher, Margaret ; Seshadri, Rekha ; Reddy, T. B. K. ; Ivanova, Natalia ; Woyke, Tanja ; Pati, Amrita ; Markowitz, Victor ; Baeshen, Mohamed N. ; Baeshen, Naseebh Nabeeh ; Kyrpides, Nikos ; Reeve, Wayne</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-osti_scitechconnect_16189713</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><topic>60 APPLIED LIFE SCIENCES</topic><topic>BASIC BIOLOGICAL SCIENCES</topic><topic>Ensifer</topic><topic>Geba-Rnb</topic><topic>lpiA-acvB operon</topic><topic>Medicago</topic><topic>Root-nodule bacteria</topic><toplevel>online_resources</toplevel><creatorcontrib>Osman, Wan Adnawani Meor</creatorcontrib><creatorcontrib>van Berkum, Peter</creatorcontrib><creatorcontrib>León-Barrios, Milagros</creatorcontrib><creatorcontrib>Velázquez, Encarna</creatorcontrib><creatorcontrib>Elia, Patrick</creatorcontrib><creatorcontrib>Tian, Rui</creatorcontrib><creatorcontrib>Ardley, Julie</creatorcontrib><creatorcontrib>Gollagher, Margaret</creatorcontrib><creatorcontrib>Seshadri, Rekha</creatorcontrib><creatorcontrib>Reddy, T. B. K.</creatorcontrib><creatorcontrib>Ivanova, Natalia</creatorcontrib><creatorcontrib>Woyke, Tanja</creatorcontrib><creatorcontrib>Pati, Amrita</creatorcontrib><creatorcontrib>Markowitz, Victor</creatorcontrib><creatorcontrib>Baeshen, Mohamed N.</creatorcontrib><creatorcontrib>Baeshen, Naseebh Nabeeh</creatorcontrib><creatorcontrib>Kyrpides, Nikos</creatorcontrib><creatorcontrib>Reeve, Wayne</creatorcontrib><creatorcontrib>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)</creatorcontrib><collection>OSTI.GOV</collection><jtitle>Standards in genomic sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Osman, Wan Adnawani Meor</au><au>van Berkum, Peter</au><au>León-Barrios, Milagros</au><au>Velázquez, Encarna</au><au>Elia, Patrick</au><au>Tian, Rui</au><au>Ardley, Julie</au><au>Gollagher, Margaret</au><au>Seshadri, Rekha</au><au>Reddy, T. B. K.</au><au>Ivanova, Natalia</au><au>Woyke, Tanja</au><au>Pati, Amrita</au><au>Markowitz, Victor</au><au>Baeshen, Mohamed N.</au><au>Baeshen, Naseebh Nabeeh</au><au>Kyrpides, Nikos</au><au>Reeve, Wayne</au><aucorp>Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain</atitle><jtitle>Standards in genomic sciences</jtitle><date>2017-09-25</date><risdate>2017</risdate><volume>12</volume><issue>1</issue><issn>1944-3277</issn><eissn>1944-3277</eissn><abstract><![CDATA[Abstract
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
Ensifer meliloti
</ext-link>
Mlalz-1 (INSDC =
<ext-link ext-link-type='uri' href='https://www.ncbi.nlm.nih.gov/nuccore/ATZD00000000'>ATZD00000000</ext-link>
) is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing nodule of
<ext-link ext-link-type='uri' href='http://www.theplantlist.org/tpl1.1/record/ild-8512'>
Medicago laciniata
</ext-link>
(L.) Miller from a soil sample collected near the town of Guatiza on the island of Lanzarote, the Canary Islands, Spain. This strain nodulates and forms an effective symbiosis with the highly specific host
M. laciniata
. This rhizobial genome was sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) sequencing project. Here the features of
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
Mlalz-1 are described, together with high-quality permanent draft genome sequence information and annotation. The 6,664,116 bp high-quality draft genome is arranged in 99 scaffolds of 100 contigs, containing 6314 protein-coding genes and 74 RNA-only encoding genes. Strain Mlalz-1 is closely related to
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
Ensifer meliloti
</ext-link>
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DIAM+12611'>IAM 12611</ext-link>
T
,
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
Ensifer medicae
</ext-link>
A 321
T
and
<ext-link ext-link-type='doi' href='10.1601/nm.17831'>
Ensifer numidicus
</ext-link>
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DORS+1407'>ORS 1407</ext-link>
T
, based on 16S rRNA gene sequences. gANI values of ≥98.1% support the classification of strain Mlalz-1 as
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
. Nodulation of
M. laciniata
requires a specific
nodC
allele, and the
nodC
gene of strain Mlalz-1 shares ≥98% sequence identity with
nodC
of
M. laciniata
-nodulating
<ext-link ext-link-type='doi' href='10.1601/nm.1328'>
Ensifer
</ext-link>
strains, but ≤93% with
nodC
of
<ext-link ext-link-type='doi' href='10.1601/nm.1328'>
Ensifer
</ext-link>
strains that nodulate other
<ext-link ext-link-type='uri' href='http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?lvl=0&id=3877'>
Medicago
</ext-link>
species. Strain Mlalz-1 is unique among sequenced
<ext-link ext-link-type='doi' href='10.1601/nm.1335'>
E. meliloti
</ext-link>
strains in possessing genes encoding components of a T2SS and in having two versions of the adaptive acid tolerance response
lpiA-acvB
operon. In
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
strain
<ext-link ext-link-type='doi' href='10.1601/strainfinder?urlappend=%3Fid%3DWSM+419'>WSM419</ext-link>
,
lpiA
is essential for enhancing survival in lethal acid conditions. The second copy of the
lpiA-acvB
operon of strain Mlalz-1 has highest sequence identity (> 96%) with that of
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
strains, which suggests genetic recombination between strain Mlalz-1 and
<ext-link ext-link-type='doi' href='10.1601/nm.1334'>
E. medicae
</ext-link>
and the horizontal gene transfer of
lpiA-acvB
.]]></abstract><cop>United Kingdom</cop><pub>Springer Science + Business Media</pub><orcidid>https://orcid.org/000000019938606X</orcidid></addata></record> |
fulltext | fulltext |
identifier | ISSN: 1944-3277 |
ispartof | Standards in genomic sciences, 2017-09, Vol.12 (1) |
issn | 1944-3277 1944-3277 |
language | eng |
recordid | cdi_osti_scitechconnect_1618971 |
source | DOAJ Directory of Open Access Journals; PubMed Central; Alma/SFX Local Collection; PubMed Central Open Access |
subjects | 60 APPLIED LIFE SCIENCES BASIC BIOLOGICAL SCIENCES Ensifer Geba-Rnb lpiA-acvB operon Medicago Root-nodule bacteria |
title | High-quality draft genome sequence of Ensifer meliloti Mlalz-1, a microsymbiont of Medicago laciniata (L.) miller collected in Lanzarote, Canary Islands, Spain |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-15T00%3A57%3A03IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-osti&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=High-quality%20draft%20genome%20sequence%20of%20Ensifer%20meliloti%20Mlalz-1,%20a%20microsymbiont%20of%20Medicago%20laciniata%20(L.)%20miller%20collected%20in%20Lanzarote,%20Canary%20Islands,%20Spain&rft.jtitle=Standards%20in%20genomic%20sciences&rft.au=Osman,%20Wan%20Adnawani%20Meor&rft.aucorp=Lawrence%20Berkeley%20National%20Laboratory%20(LBNL),%20Berkeley,%20CA%20(United%20States)&rft.date=2017-09-25&rft.volume=12&rft.issue=1&rft.issn=1944-3277&rft.eissn=1944-3277&rft_id=info:doi/&rft_dat=%3Costi%3E1618971%3C/osti%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |