Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation

•First draft genome sequence of a saprophytic white rot fungus, Schizopora paradoxa KUC8140.•Supplementing the lignocellulosic biomass decay models.•Potential biotechnological application of S. paradoxa KUC8149 in mycoremediation. Schizopora paradoxa KUC8140 is a white rot wood degrader commonly fou...

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Veröffentlicht in:Journal of biotechnology 2015-10, Vol.211 (C), p.42-43
Hauptverfasser: Min, Byoungnam, Park, Hongjae, Jang, Yeongseon, Kim, Jae-Jin, Kim, Kyoung Heon, Pangilinan, Jasmyn, Lipzen, Anna, Riley, Robert, Grigoriev, Igor V., Spatafora, Joseph W., Choi, In-Geol
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Sprache:eng
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Zusammenfassung:•First draft genome sequence of a saprophytic white rot fungus, Schizopora paradoxa KUC8140.•Supplementing the lignocellulosic biomass decay models.•Potential biotechnological application of S. paradoxa KUC8149 in mycoremediation. Schizopora paradoxa KUC8140 is a white rot wood degrader commonly found in Korea. Tolerance to heavy metals and polycyclic aromatic hydrocarbons and dye decolorization activity make this strain a potential candidate for mycoremediation. We report the genome sequence of S. paradoxa KUC8140 containing 44.4Mbp. Based on ab initio gene prediction, homology search and RNA-seq, total 17,098 gene models were annotated. We identified 17 lignin-modifying peroxidases and other 377 carbohydrate-active enzymes for modeling lignocellulose deconstruction and mycoremediation.
ISSN:0168-1656
1873-4863
DOI:10.1016/j.jbiotec.2015.06.426