Hymenobacter jeollabukensis sp. nov., isolated from soil
A Gram-stain-negative, non-motile, rod-shaped, aerobic bacterial strain, designated 1-3-3-8 T , was isolated from soil and characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain 1-3-3-8 T belongs to the family Cytophagaceae of phylum B...
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Veröffentlicht in: | The journal of microbiology 2018, 56(7), , pp.500-506 |
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Zusammenfassung: | A Gram-stain-negative, non-motile, rod-shaped, aerobic bacterial strain, designated 1-3-3-8
T
, was isolated from soil and characterized taxonomically using a polyphasic approach. Comparative 16S rRNA gene sequence analysis showed that strain 1-3-3-8
T
belongs to the family
Cytophagaceae
of phylum
Bacteroidetes
and is most closely related to
Hymenobacter paludis
KBP-30
T
(96.8% similarity),
Hymenobacter ocellatus
Myx2105
T
(96.8%),
Hymenobacter coalescens
WW84
T
(95.6%), and
Hymenobacter deserti
ZLB-3
T
(95.4%). The G + C content of the genomic DNA of strain 1-3-3-8
T
was 63.6 mol%. The isolate contained C
15:0
iso (28.4%), summed feature 4 (C
17:1
anteiso B/C
17:1
iso I; 18.9%), and C
15:0
anteiso (17.6%) as major fatty acids, MK-7 as the predominant respiratory quinone, and
sym
-homospermidine as the predominant polyamine. The major polar lipids were phosphatidylethanolamine and an unidentified lipid. The phenotypic and chemotaxonomic data supported the affiliation of strain 1-3-3-8
T
with the genus
Hymenobacter
. The DNA-DNA relatedness between strain 1-3-3-8
T
and
H. paludis
KCTC 32237
T
and
H. ocellatus
DSM 11117
T
were 24.5 and 27.4% respectively, clearly showing that the isolate is not related to them at the species level. Overall, the novel strain could be differentiated from its phylogenetic neighbors on the basis of several phenotypic, genotypic, and chemotaxonomic features. Therefore, strain 1-3-3-8
T
represents a novel species of the genus
Hymenobacter
, for which the name
Hymenobacter jeollabukensis
sp. nov. has been proposed. The type strain is 1-3-3-8
T
(= KCTC 52741
T
= JCM 32192
T
). |
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ISSN: | 1225-8873 1976-3794 |
DOI: | 10.1007/s12275-018-8085-4 |