Comparative analysis of chloroplast DNA sequences of Codonopsis lanceolata and Platycodon grandiflorus and application in development of molecular markers

Codonopsis lanceolata and Platycodon grandiflorus (order Asterales) originate from East Asia. Despite the high commercial availability of C. lanceolata and P. grandiflorus , limited genetic research has been performed on these plants. We applied a targeting enrichment method to detect genetic diversity in C. lanceolata and P. grandiflorus and recovered their chloroplast genomes from total DNA sequence data. Chloroplast DNAs (cpDNAs) were 61,154 bp ( C. lanceolata ) and 81,214 bp ( P. grandiflorus ) in length. Sixteen simple sequence repeats and 15 long repeat sequences were determined, which are useful as potential markers in both plant species. We surveyed the phylogenetic relationships with increased resolution in 14 plant species, including other 8 species from the order Asterales and 4 from the order Apiales. In addition, we demonstrated the availability of recovered chloroplast genomes through cpDNA marker development to determine the authenticity of food fraud at the DNA level of plant species.