Genome-wide identification and analysis of Subtilisin-like serine protease gene family in banana (Musa accuminta L.) and their expression under abiotic stresses
Subtilisin-like serine proteases (SBT), a serine proteolytic enzymes play an important role in plant growth function and during different stresses responses. The systematic analysis of the SBT gene family in Musa acuminate ( MaSBT ) has been done and their responses to abiotic stresses in banana var...
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Veröffentlicht in: | Plant biotechnology reports 2024, 18(1), , pp.143-160 |
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Sprache: | eng |
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Zusammenfassung: | Subtilisin-like serine proteases (SBT), a serine proteolytic enzymes play an important role in plant growth function and during different stresses responses. The systematic analysis of the SBT gene family in
Musa acuminate
(
MaSBT
) has been done and their responses to abiotic stresses in banana variety cv. G-9 were also analyzed
.
Total of 67
MaSBT
genes were identified and based on phylogeny these were grouped into five districted subgroups.
Cis
-acting element analysis indicated that almost all
MaSBT
promoters contain regulatory elementary related to growth and development, hormonal regulation, and stress responses. The gene structure and domain analysis showed a maximum of seventeen exons and four functional domains in
MaSBT
. The 42 orthologous genes, 07
MaSBT
paralogous genes were also identified through synteny analysis. The
K
a
/
K
s
study indicated that four
MaSBT
paralogous gene pairs were tandemly duplicated, while the other three were segmental duplications. Further, the expression pattern via RNA-seq data revealed that MaSBTs exhibited differential expression specifically in response to the abiotic stress of low nitrogen. and also during the flowering time. The
MaSBT-1.7
gene was found involved in the response to salt stress and flowering. These findings establish a cornerstone for future research on banana's salt stress mechanism. The study offers valuable insights into SBT encoding genes, shedding light on their roles in growth, development, and abiotic stress responses. |
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ISSN: | 1863-5466 1863-5474 |
DOI: | 10.1007/s11816-023-00855-4 |