Unsupervised domain adaptation model for lesion detection in retinal OCT images
Optical coherence tomography (OCT) is one of the most used retinal imaging modalities in the clinic as it can provide high-resolution anatomical images. The huge number of OCT images has significantly advanced the development of deep learning methods for automatic lesion detection to ease the doctor...
Gespeichert in:
Veröffentlicht in: | Physics in medicine & biology 2021-11, Vol.66 (21), p.215006 |
---|---|
Hauptverfasser: | , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | 21 |
container_start_page | 215006 |
container_title | Physics in medicine & biology |
container_volume | 66 |
creator | Wang, Jing He, Yi Fang, Wangyi Chen, Yiwei Li, Wanyue Shi, Guohua |
description | Optical coherence tomography (OCT) is one of the most used retinal imaging modalities in the clinic as it can provide high-resolution anatomical images. The huge number of OCT images has significantly advanced the development of deep learning methods for automatic lesion detection to ease the doctor's workload. However, it has been frequently revealed that the deep neural network model has difficulty handling the domain discrepancies, which widely exist in medical images captured from different devices. Many works have been proposed to solve the domain shift issue in deep learning tasks such as disease classification and lesion segmentation, but few works focused on lesion detection, especially for OCT images.
In this work, we proposed a faster-RCNN based, unsupervised domain adaptation model to address the lesion detection task in cross-device retinal OCT images. The domain shift is minimized by reducing the image-level shift and instance-level shift at the same time. We combined a domain classifier with a Wasserstein distance critic to align the shifts at each level.
The model was tested on two sets of OCT image data captured from different devices, obtained an average accuracy improvement of more than 8% over the method without domain adaptation, and outperformed other comparable domain adaptation methods.
The results demonstrate the proposed model is more effective in reducing the domain shift than advanced methods. |
doi_str_mv | 10.1088/1361-6560/ac2dd1 |
format | Article |
fullrecord | <record><control><sourceid>proquest_iop_j</sourceid><recordid>TN_cdi_iop_journals_10_1088_1361_6560_ac2dd1</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2580696231</sourcerecordid><originalsourceid>FETCH-LOGICAL-c411t-330d16cb8c00bf4741a68d1575ee64ae837f84afd5026f1fec039bf5064fd4c83</originalsourceid><addsrcrecordid>eNp9kE1r20AQhpfQkjhp7z0FHX2I6hnth9fHYNq0EPAlPi-r3dkiI2nVXamQf1-5dnwqgYGBmWdehoexLwhfEbReIVdYKqlgZV3lPV6xxWX0gS0AOJYblPKG3eZ8AEDUlbhmN1wo3Ki1XLDdvs_TQOlPk8kXPna26Qvr7TDasYl90UVPbRFiKlrKx4Gnkdy_1QwmGpvetsVu-1I0nf1F-RP7GGyb6fO537H9928v2x_l8-7p5_bxuXQCcSw5B4_K1doB1EGsBVqlPcq1JFLCkubroIUNXkKlAgZywDd1kKBE8MJpfseWp9whxd8T5dF0TXbUtranOGVTSQ1qoyqOMwon1KWYc6JghjQ_m14NgjlqNEdn5ujMnDTOJ_fn9KnuyF8O3rzNwMMJaOJgDnFKs4X8Xt7yP_jQ1UYpU-FcEkCZwQf-F5UCiZ0</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2580696231</pqid></control><display><type>article</type><title>Unsupervised domain adaptation model for lesion detection in retinal OCT images</title><source>MEDLINE</source><source>IOP Publishing Journals</source><source>Institute of Physics (IOP) Journals - HEAL-Link</source><creator>Wang, Jing ; He, Yi ; Fang, Wangyi ; Chen, Yiwei ; Li, Wanyue ; Shi, Guohua</creator><creatorcontrib>Wang, Jing ; He, Yi ; Fang, Wangyi ; Chen, Yiwei ; Li, Wanyue ; Shi, Guohua</creatorcontrib><description>Optical coherence tomography (OCT) is one of the most used retinal imaging modalities in the clinic as it can provide high-resolution anatomical images. The huge number of OCT images has significantly advanced the development of deep learning methods for automatic lesion detection to ease the doctor's workload. However, it has been frequently revealed that the deep neural network model has difficulty handling the domain discrepancies, which widely exist in medical images captured from different devices. Many works have been proposed to solve the domain shift issue in deep learning tasks such as disease classification and lesion segmentation, but few works focused on lesion detection, especially for OCT images.
In this work, we proposed a faster-RCNN based, unsupervised domain adaptation model to address the lesion detection task in cross-device retinal OCT images. The domain shift is minimized by reducing the image-level shift and instance-level shift at the same time. We combined a domain classifier with a Wasserstein distance critic to align the shifts at each level.
The model was tested on two sets of OCT image data captured from different devices, obtained an average accuracy improvement of more than 8% over the method without domain adaptation, and outperformed other comparable domain adaptation methods.
The results demonstrate the proposed model is more effective in reducing the domain shift than advanced methods.</description><identifier>ISSN: 0031-9155</identifier><identifier>EISSN: 1361-6560</identifier><identifier>DOI: 10.1088/1361-6560/ac2dd1</identifier><identifier>PMID: 34619675</identifier><identifier>CODEN: PHMBA7</identifier><language>eng</language><publisher>England: IOP Publishing</publisher><subject>domain adaptation ; faster-RCNN ; lesion detection ; Neural Networks, Computer ; optical coherence tomography ; Retina - diagnostic imaging ; Tomography, Optical Coherence - methods</subject><ispartof>Physics in medicine & biology, 2021-11, Vol.66 (21), p.215006</ispartof><rights>2021 The Author(s). Published on behalf of Institute of Physics and Engineering in Medicine by IOP Publishing Ltd</rights><rights>Creative Commons Attribution license.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c411t-330d16cb8c00bf4741a68d1575ee64ae837f84afd5026f1fec039bf5064fd4c83</citedby><cites>FETCH-LOGICAL-c411t-330d16cb8c00bf4741a68d1575ee64ae837f84afd5026f1fec039bf5064fd4c83</cites><orcidid>0000-0001-7751-8607</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://iopscience.iop.org/article/10.1088/1361-6560/ac2dd1/pdf$$EPDF$$P50$$Giop$$Hfree_for_read</linktopdf><link.rule.ids>314,780,784,27924,27925,53846,53893</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/34619675$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Jing</creatorcontrib><creatorcontrib>He, Yi</creatorcontrib><creatorcontrib>Fang, Wangyi</creatorcontrib><creatorcontrib>Chen, Yiwei</creatorcontrib><creatorcontrib>Li, Wanyue</creatorcontrib><creatorcontrib>Shi, Guohua</creatorcontrib><title>Unsupervised domain adaptation model for lesion detection in retinal OCT images</title><title>Physics in medicine & biology</title><addtitle>PMB</addtitle><addtitle>Phys. Med. Biol</addtitle><description>Optical coherence tomography (OCT) is one of the most used retinal imaging modalities in the clinic as it can provide high-resolution anatomical images. The huge number of OCT images has significantly advanced the development of deep learning methods for automatic lesion detection to ease the doctor's workload. However, it has been frequently revealed that the deep neural network model has difficulty handling the domain discrepancies, which widely exist in medical images captured from different devices. Many works have been proposed to solve the domain shift issue in deep learning tasks such as disease classification and lesion segmentation, but few works focused on lesion detection, especially for OCT images.
In this work, we proposed a faster-RCNN based, unsupervised domain adaptation model to address the lesion detection task in cross-device retinal OCT images. The domain shift is minimized by reducing the image-level shift and instance-level shift at the same time. We combined a domain classifier with a Wasserstein distance critic to align the shifts at each level.
The model was tested on two sets of OCT image data captured from different devices, obtained an average accuracy improvement of more than 8% over the method without domain adaptation, and outperformed other comparable domain adaptation methods.
The results demonstrate the proposed model is more effective in reducing the domain shift than advanced methods.</description><subject>domain adaptation</subject><subject>faster-RCNN</subject><subject>lesion detection</subject><subject>Neural Networks, Computer</subject><subject>optical coherence tomography</subject><subject>Retina - diagnostic imaging</subject><subject>Tomography, Optical Coherence - methods</subject><issn>0031-9155</issn><issn>1361-6560</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>O3W</sourceid><sourceid>EIF</sourceid><recordid>eNp9kE1r20AQhpfQkjhp7z0FHX2I6hnth9fHYNq0EPAlPi-r3dkiI2nVXamQf1-5dnwqgYGBmWdehoexLwhfEbReIVdYKqlgZV3lPV6xxWX0gS0AOJYblPKG3eZ8AEDUlbhmN1wo3Ki1XLDdvs_TQOlPk8kXPna26Qvr7TDasYl90UVPbRFiKlrKx4Gnkdy_1QwmGpvetsVu-1I0nf1F-RP7GGyb6fO537H9928v2x_l8-7p5_bxuXQCcSw5B4_K1doB1EGsBVqlPcq1JFLCkubroIUNXkKlAgZywDd1kKBE8MJpfseWp9whxd8T5dF0TXbUtranOGVTSQ1qoyqOMwon1KWYc6JghjQ_m14NgjlqNEdn5ujMnDTOJ_fn9KnuyF8O3rzNwMMJaOJgDnFKs4X8Xt7yP_jQ1UYpU-FcEkCZwQf-F5UCiZ0</recordid><startdate>20211107</startdate><enddate>20211107</enddate><creator>Wang, Jing</creator><creator>He, Yi</creator><creator>Fang, Wangyi</creator><creator>Chen, Yiwei</creator><creator>Li, Wanyue</creator><creator>Shi, Guohua</creator><general>IOP Publishing</general><scope>O3W</scope><scope>TSCCA</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0001-7751-8607</orcidid></search><sort><creationdate>20211107</creationdate><title>Unsupervised domain adaptation model for lesion detection in retinal OCT images</title><author>Wang, Jing ; He, Yi ; Fang, Wangyi ; Chen, Yiwei ; Li, Wanyue ; Shi, Guohua</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c411t-330d16cb8c00bf4741a68d1575ee64ae837f84afd5026f1fec039bf5064fd4c83</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>domain adaptation</topic><topic>faster-RCNN</topic><topic>lesion detection</topic><topic>Neural Networks, Computer</topic><topic>optical coherence tomography</topic><topic>Retina - diagnostic imaging</topic><topic>Tomography, Optical Coherence - methods</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Jing</creatorcontrib><creatorcontrib>He, Yi</creatorcontrib><creatorcontrib>Fang, Wangyi</creatorcontrib><creatorcontrib>Chen, Yiwei</creatorcontrib><creatorcontrib>Li, Wanyue</creatorcontrib><creatorcontrib>Shi, Guohua</creatorcontrib><collection>IOP Publishing Free Content</collection><collection>IOPscience (Open Access)</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><jtitle>Physics in medicine & biology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Jing</au><au>He, Yi</au><au>Fang, Wangyi</au><au>Chen, Yiwei</au><au>Li, Wanyue</au><au>Shi, Guohua</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Unsupervised domain adaptation model for lesion detection in retinal OCT images</atitle><jtitle>Physics in medicine & biology</jtitle><stitle>PMB</stitle><addtitle>Phys. Med. Biol</addtitle><date>2021-11-07</date><risdate>2021</risdate><volume>66</volume><issue>21</issue><spage>215006</spage><pages>215006-</pages><issn>0031-9155</issn><eissn>1361-6560</eissn><coden>PHMBA7</coden><abstract>Optical coherence tomography (OCT) is one of the most used retinal imaging modalities in the clinic as it can provide high-resolution anatomical images. The huge number of OCT images has significantly advanced the development of deep learning methods for automatic lesion detection to ease the doctor's workload. However, it has been frequently revealed that the deep neural network model has difficulty handling the domain discrepancies, which widely exist in medical images captured from different devices. Many works have been proposed to solve the domain shift issue in deep learning tasks such as disease classification and lesion segmentation, but few works focused on lesion detection, especially for OCT images.
In this work, we proposed a faster-RCNN based, unsupervised domain adaptation model to address the lesion detection task in cross-device retinal OCT images. The domain shift is minimized by reducing the image-level shift and instance-level shift at the same time. We combined a domain classifier with a Wasserstein distance critic to align the shifts at each level.
The model was tested on two sets of OCT image data captured from different devices, obtained an average accuracy improvement of more than 8% over the method without domain adaptation, and outperformed other comparable domain adaptation methods.
The results demonstrate the proposed model is more effective in reducing the domain shift than advanced methods.</abstract><cop>England</cop><pub>IOP Publishing</pub><pmid>34619675</pmid><doi>10.1088/1361-6560/ac2dd1</doi><tpages>12</tpages><orcidid>https://orcid.org/0000-0001-7751-8607</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 0031-9155 |
ispartof | Physics in medicine & biology, 2021-11, Vol.66 (21), p.215006 |
issn | 0031-9155 1361-6560 |
language | eng |
recordid | cdi_iop_journals_10_1088_1361_6560_ac2dd1 |
source | MEDLINE; IOP Publishing Journals; Institute of Physics (IOP) Journals - HEAL-Link |
subjects | domain adaptation faster-RCNN lesion detection Neural Networks, Computer optical coherence tomography Retina - diagnostic imaging Tomography, Optical Coherence - methods |
title | Unsupervised domain adaptation model for lesion detection in retinal OCT images |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-04T15%3A47%3A27IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_iop_j&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Unsupervised%20domain%20adaptation%20model%20for%20lesion%20detection%20in%20retinal%20OCT%20images&rft.jtitle=Physics%20in%20medicine%20&%20biology&rft.au=Wang,%20Jing&rft.date=2021-11-07&rft.volume=66&rft.issue=21&rft.spage=215006&rft.pages=215006-&rft.issn=0031-9155&rft.eissn=1361-6560&rft.coden=PHMBA7&rft_id=info:doi/10.1088/1361-6560/ac2dd1&rft_dat=%3Cproquest_iop_j%3E2580696231%3C/proquest_iop_j%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2580696231&rft_id=info:pmid/34619675&rfr_iscdi=true |