A Special-Purpose Architecture for Solving the Breakpoint Median Problem

In this paper, we describe the design for a co-processor for whole-genome phylogenetic reconstruction. Our current design performs a parallelized breakpoint median computation, which is an expensive component of the overall application. When implemented on a field-programmable gate array (FPGA), our...

Ausführliche Beschreibung

Gespeichert in:

Bibliographische Detailangaben
Veröffentlicht in:	IEEE transactions on very large scale integration (VLSI) systems 2008-12, Vol.16 (12), p.1666-1676
Hauptverfasser:	Bakos, J.D., Elenis, P.E.
Format:	Artikel
Sprache:	eng
Schlagworte:	Acceleration Application software Applied sciences Bioinformatics Biology computing Circuit properties Combinatorial analysis Computation Computational biology Computer architecture Computer programs Coprocessors Design engineering Design. Technologies. Operation analysis. Testing Digital circuits Electric, optical and optoelectronic circuits Electronic circuits Electronics Exact sciences and technology Field programmable gate arrays field-programmable gate array (FPGA) Hardware Integrated circuits Integrated circuits by function (including memories and processors) Optimization phylogenetic reconstruction Phylogeny reconfigurable computing Reconstruction Semiconductor electronics. Microelectronics. Optoelectronics. Solid state devices Signal processing algorithms Very large scale integration
Online-Zugang:	Volltext bestellen
Tags:	Tag hinzufügen Keine Tags, Fügen Sie den ersten Tag hinzu!

Schreiben Sie den ersten Kommentar!