A Neighborhood-Wide Association Study (NWAS): Example of prostate cancer aggressiveness

Purpose Cancer results from complex interactions of multiple variables at the biologic, individual, and social levels. Compared to other levels, social effects that occur geospatially in neighborhoods are not as well-studied, and empiric methods to assess these effects are limited. We propose a nove...

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Hauptverfasser: Lynch, Shannon M, Mitra, Nandita, Ross, Michelle, Newcomb, Craig, Dailey, Karl, Jackson, Tara, Zeigler-Johnson, Charnita M, Riethman, Harold, Branas, Charles C, Rebbeck, Timothy R
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Sprache:eng
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Zusammenfassung:Purpose Cancer results from complex interactions of multiple variables at the biologic, individual, and social levels. Compared to other levels, social effects that occur geospatially in neighborhoods are not as well-studied, and empiric methods to assess these effects are limited. We propose a novel Neighborhood-Wide Association Study(NWAS), analogous to genome-wide association studies(GWAS), that utilizes high-dimensional computing approaches from biology to comprehensively and empirically identify neighborhood factors associated with disease. Methods: Pennsylvania Cancer Registry data were linked to U.S. Census data. In a successively more stringent multiphase approach, we evaluated the association between neighborhood (n = 14,663 census variables) and prostate cancer aggressiveness(PCA) with n = 6,416 aggressive (Stage≥3/Gleason grade≥7 cases) vs. n = 70,670 non-aggressive (Stage
DOI:10.1371/journal.pone.0174548