Predicting Carbon Spectrum in Heteronuclear Single Quantum Coherence Spectroscopy for Online Feedback During Surgery

{}^{1} 1 H High-Resolution Magic Angle Spinning (HRMAS) Nuclear Magnetic Resonance (NMR) is a reliable technology used for detecting metabolites in solid tissues. Fast response time enables guiding surgeons in real time, for detecting tumor cells that are left over in the excision cavity. However, s...

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Veröffentlicht in:IEEE/ACM transactions on computational biology and bioinformatics 2020-03, Vol.17 (2), p.719-725
Hauptverfasser: Karakaslar, E. Onur, Coskun, Baris, Outilaft, Hassiba, Namer, Izzie Jacques, Cicek, A. Ercument
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Sprache:eng
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Zusammenfassung:{}^{1} 1 H High-Resolution Magic Angle Spinning (HRMAS) Nuclear Magnetic Resonance (NMR) is a reliable technology used for detecting metabolites in solid tissues. Fast response time enables guiding surgeons in real time, for detecting tumor cells that are left over in the excision cavity. However, severe overlap of spectral resonances in 1D signal often render distinguishing metabolites impossible. In that case, Heteronuclear Single Quantum Coherence Spectroscopy (HSQC) NMR is applied which can distinguish metabolites by generating 2D spectra ({}^{1} 1 H-{}^{13} 13 C). Unfortunately, this analysis requires much longer time and prohibits real time analysis. Thus, obtaining 2D spectrum fast has major implications in medicine. In this study, we show that using multiple multivariate regression and statistical total correlation spectroscopy, we can learn the relation between the {}^{1} 1 H and {}^{13} 13 C dimensions. Learning is possible with small sample sizes and without the need for performing the HSQC analysis, we can predict the {}^{13} 13 C dimension by just performing {}^{1} 1 H HRMAS NMR experiment. We show on a rat mode
ISSN:1545-5963
1557-9964
1557-9964
DOI:10.1109/TCBB.2019.2920646