Sub-meter tree height mapping of California using aerial images and LiDAR-informed U-Net model

Tree canopy height is one of the most important indicators of forest biomass, productivity, and ecosystem structure, but it is challenging to measure accurately from the ground and from space. Here, we used a U-Net model adapted for regression to map the canopy height of all trees in the state of California with very high-resolution aerial imagery 0.6 m from the USDA-NAIP program. The U-Net model was trained using canopy height models computed from aerial LiDAR data as a reference, along with corresponding RGB-NIR NAIP images collected in 2020. We evaluated the performance of the deep-learning model using 42 independent 1 km2 areas across various forest types and landscape variations in California. Our predictions of tree heights exhibited a mean error of 2.9 m and showed relatively low systematic bias across the entire range of tree heights present in California. In 2020, trees taller than 5 m covered ∼ 19.3% of California. Our model successfully estimated canopy heights up to 50 m without saturation, outperforming existing canopy height products from global models. The approach we used allowed for the reconstruction of the three-dimensional structure of individual trees as observed from nadir-looking optical airborne imagery, suggesting a relatively robust estimation and mapping capability, even in the presence of image distortion. These findings demonstrate the potential of large-scale mapping and monitoring of tree height, as well as potential biomass estimation, using NAIP imagery. •Sub-meter California tree canopy height map (mean average error of 2.9 m)•Tree height predicted with LiDAR-Informed U-Net and sub-meter (0.6 m) aerial images.•Validated with canopy height models from LiDAR in 42 sites of 1 × 1 km.•3D tree's structure recovery from a nadir view independent of sensor view-angle•Reproducible in countries with aerial VHR image national coverage and LiDAR flights