Single-Nucleotide Polymorphism-Defined Class I and Class III Major Histocompatibility Complex Genetic Subregions Contribute to Natural Long-term Nonprogression in HIV Infection
We performed a genome-wide association study comparing a cohort of 144 human immunodeficiency virus (HIV type 1-infected, untreated white long-term nonprogressors (LTNPs) with a cohort of 605 HIV-1-infected white seroconverters. Forty-seven single-nucleotide polymorphisms (SNPs), located from class...
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| creator | Guergnon, J. Dalmasso, C. Broet, P. Meyer, L. Westrop, S. J. Imami, N. Vicenzi, E. Morsica, G. Tinelli, M. Poma, B. Zanone Goujard, C. Potard, V. Gotch, F. M. Casoli, C. Cossarizza, A. Macciardi, F. Debré, P. Delfraissy, J. F. Galli, M. Autran, B. Costagliola, D. Poli, G. Theodorou, I. Riva, A. |
| description | We performed a genome-wide association study comparing a cohort of 144 human immunodeficiency virus (HIV type 1-infected, untreated white long-term nonprogressors (LTNPs) with a cohort of 605 HIV-1-infected white seroconverters. Forty-seven single-nucleotide polymorphisms (SNPs), located from class I to class III major histocompatibility complex (MHC) subregions, show statistical association (false discovery rate, |
| doi_str_mv | 10.1093/infdis/jir833 |
| format | Article |
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J. ; Imami, N. ; Vicenzi, E. ; Morsica, G. ; Tinelli, M. ; Poma, B. Zanone ; Goujard, C. ; Potard, V. ; Gotch, F. M. ; Casoli, C. ; Cossarizza, A. ; Macciardi, F. ; Debré, P. ; Delfraissy, J. F. ; Galli, M. ; Autran, B. ; Costagliola, D. ; Poli, G. ; Theodorou, I. ; Riva, A.</creator><creatorcontrib>Guergnon, J. ; Dalmasso, C. ; Broet, P. ; Meyer, L. ; Westrop, S. J. ; Imami, N. ; Vicenzi, E. ; Morsica, G. ; Tinelli, M. ; Poma, B. Zanone ; Goujard, C. ; Potard, V. ; Gotch, F. M. ; Casoli, C. ; Cossarizza, A. ; Macciardi, F. ; Debré, P. ; Delfraissy, J. F. ; Galli, M. ; Autran, B. ; Costagliola, D. ; Poli, G. ; Theodorou, I. ; Riva, A. ; GISHEAL Consortium ; GISHEAL Consortium</creatorcontrib><description>We performed a genome-wide association study comparing a cohort of 144 human immunodeficiency virus (HIV type 1-infected, untreated white long-term nonprogressors (LTNPs) with a cohort of 605 HIV-1-infected white seroconverters. Forty-seven single-nucleotide polymorphisms (SNPs), located from class I to class III major histocompatibility complex (MHC) subregions, show statistical association (false discovery rate, <0.05) with the LTNP condition, among which 5 reached genome-wide significance after Bonferonni correction. The MHC LTNP-associated SNPs are ordered in ≥4 linkage disequilibrium blocks; interestingly, an MHC class III linkage disequilibrium block (defined by the rs9368699 SNP) seems specific to the LTNP phenotype.</description><identifier>ISSN: 0022-1899</identifier><identifier>EISSN: 1537-6613</identifier><identifier>DOI: 10.1093/infdis/jir833</identifier><identifier>PMID: 22238471</identifier><identifier>CODEN: JIDIAQ</identifier><language>eng</language><publisher>Oxford: Oxford University Press</publisher><subject>Alleles ; Biological and medical sciences ; Chromosomes ; Disease Progression ; DNA-Binding Proteins - genetics ; Fundamental and applied biological sciences. Psychology ; Gene Frequency ; Genes ; Genes, MHC Class I - genetics ; Genetic loci ; Genome-Wide Association Study ; Histocompatibility Antigens Class I - genetics ; HIV ; HIV 1 ; HIV Infections - genetics ; HIV/AIDS ; Human immunodeficiency virus ; Human viral diseases ; Humans ; Infectious diseases ; Life Sciences ; Major Histocompatibility Complex - genetics ; Medical genetics ; Medical sciences ; Microbiology ; Phenotypes ; Polymorphism, Single Nucleotide ; RNA, Long Noncoding ; RNA, Untranslated ; Time Factors ; Transcription Factors - genetics ; Transplantation immunology ; Viral diseases ; Viral diseases of the lymphoid tissue and the blood. Aids</subject><ispartof>The Journal of infectious diseases, 2012-03, Vol.205 (5), p.718-724</ispartof><rights>Copyright © 2012 Oxford University Press on behalf of the Infectious Diseases Society of America</rights><rights>The Author 2012. Published by Oxford University Press on behalf of the Infectious Diseases Society of America. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com 2012</rights><rights>2015 INIST-CNRS</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c444t-d28f601f3ee93ce96b8090e4d0d58f5a68005c6afaae0ee99087acabc37f54ec3</citedby><cites>FETCH-LOGICAL-c444t-d28f601f3ee93ce96b8090e4d0d58f5a68005c6afaae0ee99087acabc37f54ec3</cites><orcidid>0000-0002-8337-1661 ; 0000-0001-5707-2062 ; 0000-0002-1455-5782</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.jstor.org/stable/pdf/41418482$$EPDF$$P50$$Gjstor$$H</linktopdf><linktohtml>$$Uhttps://www.jstor.org/stable/41418482$$EHTML$$P50$$Gjstor$$H</linktohtml><link.rule.ids>230,314,776,780,799,881,1578,27903,27904,57996,58229</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=25595955$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/22238471$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://hal.inrae.fr/hal-02653053$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Guergnon, J.</creatorcontrib><creatorcontrib>Dalmasso, C.</creatorcontrib><creatorcontrib>Broet, P.</creatorcontrib><creatorcontrib>Meyer, L.</creatorcontrib><creatorcontrib>Westrop, S. J.</creatorcontrib><creatorcontrib>Imami, N.</creatorcontrib><creatorcontrib>Vicenzi, E.</creatorcontrib><creatorcontrib>Morsica, G.</creatorcontrib><creatorcontrib>Tinelli, M.</creatorcontrib><creatorcontrib>Poma, B. Zanone</creatorcontrib><creatorcontrib>Goujard, C.</creatorcontrib><creatorcontrib>Potard, V.</creatorcontrib><creatorcontrib>Gotch, F. M.</creatorcontrib><creatorcontrib>Casoli, C.</creatorcontrib><creatorcontrib>Cossarizza, A.</creatorcontrib><creatorcontrib>Macciardi, F.</creatorcontrib><creatorcontrib>Debré, P.</creatorcontrib><creatorcontrib>Delfraissy, J. F.</creatorcontrib><creatorcontrib>Galli, M.</creatorcontrib><creatorcontrib>Autran, B.</creatorcontrib><creatorcontrib>Costagliola, D.</creatorcontrib><creatorcontrib>Poli, G.</creatorcontrib><creatorcontrib>Theodorou, I.</creatorcontrib><creatorcontrib>Riva, A.</creatorcontrib><creatorcontrib>GISHEAL Consortium</creatorcontrib><creatorcontrib>GISHEAL Consortium</creatorcontrib><title>Single-Nucleotide Polymorphism-Defined Class I and Class III Major Histocompatibility Complex Genetic Subregions Contribute to Natural Long-term Nonprogression in HIV Infection</title><title>The Journal of infectious diseases</title><addtitle>J Infect Dis</addtitle><description>We performed a genome-wide association study comparing a cohort of 144 human immunodeficiency virus (HIV type 1-infected, untreated white long-term nonprogressors (LTNPs) with a cohort of 605 HIV-1-infected white seroconverters. Forty-seven single-nucleotide polymorphisms (SNPs), located from class I to class III major histocompatibility complex (MHC) subregions, show statistical association (false discovery rate, <0.05) with the LTNP condition, among which 5 reached genome-wide significance after Bonferonni correction. The MHC LTNP-associated SNPs are ordered in ≥4 linkage disequilibrium blocks; interestingly, an MHC class III linkage disequilibrium block (defined by the rs9368699 SNP) seems specific to the LTNP phenotype.</description><subject>Alleles</subject><subject>Biological and medical sciences</subject><subject>Chromosomes</subject><subject>Disease Progression</subject><subject>DNA-Binding Proteins - genetics</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>Gene Frequency</subject><subject>Genes</subject><subject>Genes, MHC Class I - genetics</subject><subject>Genetic loci</subject><subject>Genome-Wide Association Study</subject><subject>Histocompatibility Antigens Class I - genetics</subject><subject>HIV</subject><subject>HIV 1</subject><subject>HIV Infections - genetics</subject><subject>HIV/AIDS</subject><subject>Human immunodeficiency virus</subject><subject>Human viral diseases</subject><subject>Humans</subject><subject>Infectious diseases</subject><subject>Life Sciences</subject><subject>Major Histocompatibility Complex - genetics</subject><subject>Medical genetics</subject><subject>Medical sciences</subject><subject>Microbiology</subject><subject>Phenotypes</subject><subject>Polymorphism, Single Nucleotide</subject><subject>RNA, Long Noncoding</subject><subject>RNA, Untranslated</subject><subject>Time Factors</subject><subject>Transcription Factors - genetics</subject><subject>Transplantation immunology</subject><subject>Viral diseases</subject><subject>Viral diseases of the lymphoid tissue and the blood. Aids</subject><issn>0022-1899</issn><issn>1537-6613</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2012</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqF0k2P1CAYB_DGaNxx9OhRw8Woh7pQKKXHzag7TcbRZNVrQ-nTWSYUZoEa51v5EWXTcbxpOPD2A57kT5Y9J_gdwTW91Hbodbjcay8ofZAtSEmrnHNCH2YLjIsiJ6KuL7InIewxxozy6nF2URQFFawii-zXjbY7A_l2UgZc1D2gL84cR-cPtzqM-XsYtIUerYwMATVI2vO4adAnuXcerXWITrnxIKPutNHxiFZpZuAnugYLUSt0M3UedtrZkLZs9LqbIqDo0FbGyUuDNs7u8gh-RFtnD97tPISQPNIWrZvvqLEDqJgWnmaPBmkCPDv1y-zbxw9fV-t88_m6WV1tcsUYi3lfiIFjMlCAmiqoeSdwjYH1uC_FUEouMC4Vl4OUgJOpsaikkp2i1VAyUHSZvZ3vvZWmPXg9Sn9sndTt-mrT3q_hgpcUl_QHSfb1bFPhdxOE2I46KDBGWnBTaOuiqkXFUkDL7M0_JeGs4CTFwxPNZ6q8C8HDcK6C4PY--naOvp2jT_7l6eqpG6E_6z9ZJ_DqBGRQ0gxeWpWOn11Z1qmVf2t00-G_b76Y6T79AH_GjDAimCjob64f0zE</recordid><startdate>20120301</startdate><enddate>20120301</enddate><creator>Guergnon, J.</creator><creator>Dalmasso, C.</creator><creator>Broet, P.</creator><creator>Meyer, L.</creator><creator>Westrop, S. J.</creator><creator>Imami, N.</creator><creator>Vicenzi, E.</creator><creator>Morsica, G.</creator><creator>Tinelli, M.</creator><creator>Poma, B. Zanone</creator><creator>Goujard, C.</creator><creator>Potard, V.</creator><creator>Gotch, F. M.</creator><creator>Casoli, C.</creator><creator>Cossarizza, A.</creator><creator>Macciardi, F.</creator><creator>Debré, P.</creator><creator>Delfraissy, J. F.</creator><creator>Galli, M.</creator><creator>Autran, B.</creator><creator>Costagliola, D.</creator><creator>Poli, G.</creator><creator>Theodorou, I.</creator><creator>Riva, A.</creator><general>Oxford University Press</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7T5</scope><scope>7TM</scope><scope>8FD</scope><scope>FR3</scope><scope>H94</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>1XC</scope><orcidid>https://orcid.org/0000-0002-8337-1661</orcidid><orcidid>https://orcid.org/0000-0001-5707-2062</orcidid><orcidid>https://orcid.org/0000-0002-1455-5782</orcidid></search><sort><creationdate>20120301</creationdate><title>Single-Nucleotide Polymorphism-Defined Class I and Class III Major Histocompatibility Complex Genetic Subregions Contribute to Natural Long-term Nonprogression in HIV Infection</title><author>Guergnon, J. ; Dalmasso, C. ; Broet, P. ; Meyer, L. ; Westrop, S. J. ; Imami, N. ; Vicenzi, E. ; Morsica, G. ; Tinelli, M. ; Poma, B. Zanone ; Goujard, C. ; Potard, V. ; Gotch, F. M. ; Casoli, C. ; Cossarizza, A. ; Macciardi, F. ; Debré, P. ; Delfraissy, J. F. ; Galli, M. ; Autran, B. ; Costagliola, D. ; Poli, G. ; Theodorou, I. ; Riva, A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c444t-d28f601f3ee93ce96b8090e4d0d58f5a68005c6afaae0ee99087acabc37f54ec3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2012</creationdate><topic>Alleles</topic><topic>Biological and medical sciences</topic><topic>Chromosomes</topic><topic>Disease Progression</topic><topic>DNA-Binding Proteins - genetics</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>Gene Frequency</topic><topic>Genes</topic><topic>Genes, MHC Class I - genetics</topic><topic>Genetic loci</topic><topic>Genome-Wide Association Study</topic><topic>Histocompatibility Antigens Class I - genetics</topic><topic>HIV</topic><topic>HIV 1</topic><topic>HIV Infections - genetics</topic><topic>HIV/AIDS</topic><topic>Human immunodeficiency virus</topic><topic>Human viral diseases</topic><topic>Humans</topic><topic>Infectious diseases</topic><topic>Life Sciences</topic><topic>Major Histocompatibility Complex - genetics</topic><topic>Medical genetics</topic><topic>Medical sciences</topic><topic>Microbiology</topic><topic>Phenotypes</topic><topic>Polymorphism, Single Nucleotide</topic><topic>RNA, Long Noncoding</topic><topic>RNA, Untranslated</topic><topic>Time Factors</topic><topic>Transcription Factors - genetics</topic><topic>Transplantation immunology</topic><topic>Viral diseases</topic><topic>Viral diseases of the lymphoid tissue and the blood. Aids</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Guergnon, J.</creatorcontrib><creatorcontrib>Dalmasso, C.</creatorcontrib><creatorcontrib>Broet, P.</creatorcontrib><creatorcontrib>Meyer, L.</creatorcontrib><creatorcontrib>Westrop, S. J.</creatorcontrib><creatorcontrib>Imami, N.</creatorcontrib><creatorcontrib>Vicenzi, E.</creatorcontrib><creatorcontrib>Morsica, G.</creatorcontrib><creatorcontrib>Tinelli, M.</creatorcontrib><creatorcontrib>Poma, B. Zanone</creatorcontrib><creatorcontrib>Goujard, C.</creatorcontrib><creatorcontrib>Potard, V.</creatorcontrib><creatorcontrib>Gotch, F. M.</creatorcontrib><creatorcontrib>Casoli, C.</creatorcontrib><creatorcontrib>Cossarizza, A.</creatorcontrib><creatorcontrib>Macciardi, F.</creatorcontrib><creatorcontrib>Debré, P.</creatorcontrib><creatorcontrib>Delfraissy, J. 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J.</au><au>Imami, N.</au><au>Vicenzi, E.</au><au>Morsica, G.</au><au>Tinelli, M.</au><au>Poma, B. Zanone</au><au>Goujard, C.</au><au>Potard, V.</au><au>Gotch, F. M.</au><au>Casoli, C.</au><au>Cossarizza, A.</au><au>Macciardi, F.</au><au>Debré, P.</au><au>Delfraissy, J. F.</au><au>Galli, M.</au><au>Autran, B.</au><au>Costagliola, D.</au><au>Poli, G.</au><au>Theodorou, I.</au><au>Riva, A.</au><aucorp>GISHEAL Consortium</aucorp><aucorp>GISHEAL Consortium</aucorp><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Single-Nucleotide Polymorphism-Defined Class I and Class III Major Histocompatibility Complex Genetic Subregions Contribute to Natural Long-term Nonprogression in HIV Infection</atitle><jtitle>The Journal of infectious diseases</jtitle><addtitle>J Infect Dis</addtitle><date>2012-03-01</date><risdate>2012</risdate><volume>205</volume><issue>5</issue><spage>718</spage><epage>724</epage><pages>718-724</pages><issn>0022-1899</issn><eissn>1537-6613</eissn><coden>JIDIAQ</coden><abstract>We performed a genome-wide association study comparing a cohort of 144 human immunodeficiency virus (HIV type 1-infected, untreated white long-term nonprogressors (LTNPs) with a cohort of 605 HIV-1-infected white seroconverters. Forty-seven single-nucleotide polymorphisms (SNPs), located from class I to class III major histocompatibility complex (MHC) subregions, show statistical association (false discovery rate, <0.05) with the LTNP condition, among which 5 reached genome-wide significance after Bonferonni correction. The MHC LTNP-associated SNPs are ordered in ≥4 linkage disequilibrium blocks; interestingly, an MHC class III linkage disequilibrium block (defined by the rs9368699 SNP) seems specific to the LTNP phenotype.</abstract><cop>Oxford</cop><pub>Oxford University Press</pub><pmid>22238471</pmid><doi>10.1093/infdis/jir833</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-8337-1661</orcidid><orcidid>https://orcid.org/0000-0001-5707-2062</orcidid><orcidid>https://orcid.org/0000-0002-1455-5782</orcidid></addata></record> |
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| ispartof | The Journal of infectious diseases, 2012-03, Vol.205 (5), p.718-724 |
| issn | 0022-1899 1537-6613 |
| language | eng |
| recordid | cdi_hal_primary_oai_HAL_hal_02653053v1 |
| source | MEDLINE; Jstor Complete Legacy; Oxford University Press Journals All Titles (1996-Current); Alma/SFX Local Collection |
| subjects | Alleles Biological and medical sciences Chromosomes Disease Progression DNA-Binding Proteins - genetics Fundamental and applied biological sciences. Psychology Gene Frequency Genes Genes, MHC Class I - genetics Genetic loci Genome-Wide Association Study Histocompatibility Antigens Class I - genetics HIV HIV 1 HIV Infections - genetics HIV/AIDS Human immunodeficiency virus Human viral diseases Humans Infectious diseases Life Sciences Major Histocompatibility Complex - genetics Medical genetics Medical sciences Microbiology Phenotypes Polymorphism, Single Nucleotide RNA, Long Noncoding RNA, Untranslated Time Factors Transcription Factors - genetics Transplantation immunology Viral diseases Viral diseases of the lymphoid tissue and the blood. Aids |
| title | Single-Nucleotide Polymorphism-Defined Class I and Class III Major Histocompatibility Complex Genetic Subregions Contribute to Natural Long-term Nonprogression in HIV Infection |
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