Extreme Diversity of Diplonemid Eukaryotes in the Ocean

The world’s oceans represent by far the largest biome, with great importance for the global ecosystem [1–4]. The vast majority of ocean biomass and biodiversity is composed of microscopic plankton. Recent results from the Tara Oceans metabarcoding study revealed that a significant part of the plankton in the upper sunlit layer of the ocean is represented by an understudied group of heterotrophic excavate flagellates called diplonemids [5, 6]. We have analyzed the diversity and distribution patterns of diplonemid populations on the extended set of Tara Oceans V9 18S rDNA metabarcodes amplified from 850 size- fractionated plankton communities sampled across 123 globally distributed locations, for the first time also including samples from the mesopelagic zone, which spans the depth from about 200 to 1,000 meters. Diplonemids separate into four major clades, with the vast majority falling into the deep-sea pelagic diplonemid clade. Remarkably, diversity of this clade inferred from metabarcoding data surpasses even that of dinoflagellates, metazoans, and rhizarians, qualifying diplonemids as possibly the most diverse group of marine planktonic eukaryotes. Diplonemids display strong vertical separation between the photic and mesopelagic layers, with the majority of their relative abundance and diversity occurring in deeper waters. Globally, diplonemids display no apparent biogeographic structuring, with a few hyperabundant cosmopolitan operational taxonomic units (OTUs) dominating their communities. Our results suggest that the planktonic diplonemids are among the key heterotrophic players in the largest ecosystem of our biosphere, yet their roles in this ecosystem remain unknown. •Pelagic diplonemids are the most diverse planktonic eukaryotes in the ocean•They are depth stratified and are more abundant and diverse in the deep ocean•Diplonemids are cosmopolitan, with no clear biogeographic structuring•They may be key players in the ocean ecosystem, yet their role remains unknown Flegontova et al. present detailed analysis of global diversity and distribution of diplonemids, the most diverse planktonic eukaryotes. They find diplonemids to be virtually ubiquitous but much more abundant and diverse in the deep ocean. The results suggest that they are among the key players of the ocean ecosystem, yet their role remains unknown.