Transcriptome Analysis of IBacillus amyloliquefaciens/I Reveals Fructose Addition Effects on Fengycin Synthesis
Fengycin is a lipopeptide produced by Bacillus that has a strong inhibitory effect on filamentous fungi; however, its use is restricted due to poor production and low yield. Previous studies have shown that fengycin biosynthesis in B. amyloliquefaciens was found to be significantly increased after f...
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Veröffentlicht in: | Genes 2022-05, Vol.13 (6) |
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creator | Lu, Hedong Xu, Hai Yang, Panping Bilal, Muhammad Zhu, Shaohui Zhong, Mengyuan Zhao, Li Gu, Chengyuan Liu, Shuai Zhao, Yuping Geng, Chengxin |
description | Fengycin is a lipopeptide produced by Bacillus that has a strong inhibitory effect on filamentous fungi; however, its use is restricted due to poor production and low yield. Previous studies have shown that fengycin biosynthesis in B. amyloliquefaciens was found to be significantly increased after fructose addition. This study investigated the effect of fructose on fengycin production and its regulation mechanism in B. amyloliquefaciens by transcriptome sequencing. According to the RNA sequencing data, 458 genes were upregulated and 879 genes were downregulated. Transcriptome analysis results showed that fructose changed the transcription of amino acid synthesis, fatty acid metabolism, and energy metabolism; alterations in these metabolic pathways contribute to the synthesis of fengycin. In an MLF medium (modified Landy medium with fructose), the expression level of the fengycin operon was two-times higher than in an ML medium (modified Landy medium). After fructose was added to B. amyloliquefaciens, the fengycin-synthesis-associated genes were activated in the process of fengycin synthesis. |
doi_str_mv | 10.3390/genes13060984 |
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Previous studies have shown that fengycin biosynthesis in B. amyloliquefaciens was found to be significantly increased after fructose addition. This study investigated the effect of fructose on fengycin production and its regulation mechanism in B. amyloliquefaciens by transcriptome sequencing. According to the RNA sequencing data, 458 genes were upregulated and 879 genes were downregulated. Transcriptome analysis results showed that fructose changed the transcription of amino acid synthesis, fatty acid metabolism, and energy metabolism; alterations in these metabolic pathways contribute to the synthesis of fengycin. In an MLF medium (modified Landy medium with fructose), the expression level of the fengycin operon was two-times higher than in an ML medium (modified Landy medium). After fructose was added to B. amyloliquefaciens, the fengycin-synthesis-associated genes were activated in the process of fengycin synthesis.</description><identifier>ISSN: 2073-4425</identifier><identifier>EISSN: 2073-4425</identifier><identifier>DOI: 10.3390/genes13060984</identifier><language>eng</language><publisher>MDPI AG</publisher><subject>Bacillus (Bacteria) ; Fructose ; Gene expression ; Genetic aspects ; Microbial metabolism ; Microbiological research ; Microbiological synthesis ; Peptides ; Physiological aspects ; Synthesis</subject><ispartof>Genes, 2022-05, Vol.13 (6)</ispartof><rights>COPYRIGHT 2022 MDPI AG</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27903,27904</link.rule.ids></links><search><creatorcontrib>Lu, Hedong</creatorcontrib><creatorcontrib>Xu, Hai</creatorcontrib><creatorcontrib>Yang, Panping</creatorcontrib><creatorcontrib>Bilal, Muhammad</creatorcontrib><creatorcontrib>Zhu, Shaohui</creatorcontrib><creatorcontrib>Zhong, Mengyuan</creatorcontrib><creatorcontrib>Zhao, Li</creatorcontrib><creatorcontrib>Gu, Chengyuan</creatorcontrib><creatorcontrib>Liu, Shuai</creatorcontrib><creatorcontrib>Zhao, Yuping</creatorcontrib><creatorcontrib>Geng, Chengxin</creatorcontrib><title>Transcriptome Analysis of IBacillus amyloliquefaciens/I Reveals Fructose Addition Effects on Fengycin Synthesis</title><title>Genes</title><description>Fengycin is a lipopeptide produced by Bacillus that has a strong inhibitory effect on filamentous fungi; however, its use is restricted due to poor production and low yield. Previous studies have shown that fengycin biosynthesis in B. amyloliquefaciens was found to be significantly increased after fructose addition. This study investigated the effect of fructose on fengycin production and its regulation mechanism in B. amyloliquefaciens by transcriptome sequencing. According to the RNA sequencing data, 458 genes were upregulated and 879 genes were downregulated. Transcriptome analysis results showed that fructose changed the transcription of amino acid synthesis, fatty acid metabolism, and energy metabolism; alterations in these metabolic pathways contribute to the synthesis of fengycin. In an MLF medium (modified Landy medium with fructose), the expression level of the fengycin operon was two-times higher than in an ML medium (modified Landy medium). After fructose was added to B. amyloliquefaciens, the fengycin-synthesis-associated genes were activated in the process of fengycin synthesis.</description><subject>Bacillus (Bacteria)</subject><subject>Fructose</subject><subject>Gene expression</subject><subject>Genetic aspects</subject><subject>Microbial metabolism</subject><subject>Microbiological research</subject><subject>Microbiological synthesis</subject><subject>Peptides</subject><subject>Physiological aspects</subject><subject>Synthesis</subject><issn>2073-4425</issn><issn>2073-4425</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><sourceid/><recordid>eNptjE1LAzEQhoMoWGqP3gOet83XZjfHWlotFATtvaTJZI3sJrrZFfbfG9BDD84cZnh5nwehe0qWnCuyaiBAopxIompxhWaMVLwQgpXXF_8tWqT0QfIIwggpZygeex2S6f3nEDvA66DbKfmEo8P7R218244J625qY-u_RnA5gpBWe_wK36DbhHf9aIaYMmqtH3wMeOscmCErAt5BaCbjA36bwvAOWXyHblzGYPF35-i42x43z8Xh5Wm_WR-KRlZ1UeuzMJLVZ1VLIkEoY40CKS3jppTEsrOUJXWCl6WQktfKgiSVda6inBGr-Bw9_Gob3cLJBxeHXpvOJ3NaV0xRWjJa59byn1ZeC503MYDzOb8AfgAAxmxw</recordid><startdate>20220501</startdate><enddate>20220501</enddate><creator>Lu, Hedong</creator><creator>Xu, Hai</creator><creator>Yang, Panping</creator><creator>Bilal, Muhammad</creator><creator>Zhu, Shaohui</creator><creator>Zhong, Mengyuan</creator><creator>Zhao, Li</creator><creator>Gu, Chengyuan</creator><creator>Liu, Shuai</creator><creator>Zhao, Yuping</creator><creator>Geng, Chengxin</creator><general>MDPI AG</general><scope/></search><sort><creationdate>20220501</creationdate><title>Transcriptome Analysis of IBacillus amyloliquefaciens/I Reveals Fructose Addition Effects on Fengycin Synthesis</title><author>Lu, Hedong ; Xu, Hai ; Yang, Panping ; Bilal, Muhammad ; Zhu, Shaohui ; Zhong, Mengyuan ; Zhao, Li ; Gu, Chengyuan ; Liu, Shuai ; Zhao, Yuping ; Geng, Chengxin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-g678-8ab4c628b98606e49cdc9e66d23c560d2b6651f4355466389de607dff71320d93</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><topic>Bacillus (Bacteria)</topic><topic>Fructose</topic><topic>Gene expression</topic><topic>Genetic aspects</topic><topic>Microbial metabolism</topic><topic>Microbiological research</topic><topic>Microbiological synthesis</topic><topic>Peptides</topic><topic>Physiological aspects</topic><topic>Synthesis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lu, Hedong</creatorcontrib><creatorcontrib>Xu, Hai</creatorcontrib><creatorcontrib>Yang, Panping</creatorcontrib><creatorcontrib>Bilal, Muhammad</creatorcontrib><creatorcontrib>Zhu, Shaohui</creatorcontrib><creatorcontrib>Zhong, Mengyuan</creatorcontrib><creatorcontrib>Zhao, Li</creatorcontrib><creatorcontrib>Gu, Chengyuan</creatorcontrib><creatorcontrib>Liu, Shuai</creatorcontrib><creatorcontrib>Zhao, Yuping</creatorcontrib><creatorcontrib>Geng, Chengxin</creatorcontrib><jtitle>Genes</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lu, Hedong</au><au>Xu, Hai</au><au>Yang, Panping</au><au>Bilal, Muhammad</au><au>Zhu, Shaohui</au><au>Zhong, Mengyuan</au><au>Zhao, Li</au><au>Gu, Chengyuan</au><au>Liu, Shuai</au><au>Zhao, Yuping</au><au>Geng, Chengxin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcriptome Analysis of IBacillus amyloliquefaciens/I Reveals Fructose Addition Effects on Fengycin Synthesis</atitle><jtitle>Genes</jtitle><date>2022-05-01</date><risdate>2022</risdate><volume>13</volume><issue>6</issue><issn>2073-4425</issn><eissn>2073-4425</eissn><abstract>Fengycin is a lipopeptide produced by Bacillus that has a strong inhibitory effect on filamentous fungi; however, its use is restricted due to poor production and low yield. Previous studies have shown that fengycin biosynthesis in B. amyloliquefaciens was found to be significantly increased after fructose addition. This study investigated the effect of fructose on fengycin production and its regulation mechanism in B. amyloliquefaciens by transcriptome sequencing. According to the RNA sequencing data, 458 genes were upregulated and 879 genes were downregulated. Transcriptome analysis results showed that fructose changed the transcription of amino acid synthesis, fatty acid metabolism, and energy metabolism; alterations in these metabolic pathways contribute to the synthesis of fengycin. In an MLF medium (modified Landy medium with fructose), the expression level of the fengycin operon was two-times higher than in an ML medium (modified Landy medium). After fructose was added to B. amyloliquefaciens, the fengycin-synthesis-associated genes were activated in the process of fengycin synthesis.</abstract><pub>MDPI AG</pub><doi>10.3390/genes13060984</doi></addata></record> |
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source | MDPI - Multidisciplinary Digital Publishing Institute; EZB-FREE-00999 freely available EZB journals; PubMed Central; PubMed Central Open Access |
subjects | Bacillus (Bacteria) Fructose Gene expression Genetic aspects Microbial metabolism Microbiological research Microbiological synthesis Peptides Physiological aspects Synthesis |
title | Transcriptome Analysis of IBacillus amyloliquefaciens/I Reveals Fructose Addition Effects on Fengycin Synthesis |
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