Dynamic regulatory network controlling [T.sub.H]17 cell differentiation

Despite their importance, the molecular circuits that control the differentiation of naive T cells remain largely unknown. Recent studies that reconstructed regulatory networks in mammalian cells have focused on short-term responses and relied on perturbation-based approaches that cannot be readily...

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Veröffentlicht in:Nature (London) 2013-04, Vol.496 (7446), p.461
Hauptverfasser: Yosef, Nir, Shalek, Alex K, Gaublomme, Jellert T, Jin, Hulin, Lee, Youjin, Awasthi, Amit, Wu, Chuan, Karwacz, Katarzyna, Xiao, Sheng, Jorgolli, Marsela, Gennert, David, Satija, Rahul, Shakya, Arvind, Lu, Diana Y, Trombetta, John J, Pillai, Meenu R, Ratcliffe, Peter J, Coleman, Mathew L, Bix, Mark, Tantin, Dean, Park, Hongkun, Kuchroo, Vijay K, Regev, Aviv
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Sprache:eng
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Zusammenfassung:Despite their importance, the molecular circuits that control the differentiation of naive T cells remain largely unknown. Recent studies that reconstructed regulatory networks in mammalian cells have focused on short-term responses and relied on perturbation-based approaches that cannot be readily applied to primary T cells. Here we combine transcriptional profiling at high temporal resolution, novel computational algorithms, and innovative nanowirebased perturbation tools to systematically derive and experimentally validate a model of the dynamic regulatory network that controls the differentiation of mouse [T.sub.H]17 cells, a proinflammatory T-cell subset that has been implicated in the pathogenesis of multiple autoimmune diseases. The [T.sub.H]17 transcriptional network consists of two self-reinforcing, but mutually antagonistic, modules, with 12 novel regulators, the coupled action of which may be essential for maintaining the balance between [T.sub.H]17 and other CD[4.sup.+] T-cell subsets. Our study identifies and validates 39 regulatory factors, embeds them within a comprehensive temporal network and reveals its organizational principles; it also highlights novel drug targets for controlling [T.sub.H]17 cell differentiation.
ISSN:0028-0836
1476-4687
DOI:10.1038/nature11981