Transcription analysis of the prolate-headed lactococcal bacteriophage c2
A detailed transcription map of the prolate-headed lactococcal phage c2 has been constructed. Transcription of about one-third of the genome, encoding 22 open reading frames, began within the first 2 min of infection and produced at least 12 overlapping transcripts that persisted until lysis occurre...
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Veröffentlicht in: | Journal of Bacteriology 1998-09, Vol.180 (17), p.4487-4496 |
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description | A detailed transcription map of the prolate-headed lactococcal phage c2 has been constructed. Transcription of about one-third of the genome, encoding 22 open reading frames, began within the first 2 min of infection and produced at least 12 overlapping transcripts that persisted until lysis occurred at 30 min after initiation of infection. The remaining two-thirds of the genome, encoding 17 open reading frames, was divergently transcribed, beginning between 4 and 6 min after initiation of infection, and resulted in at least 18 overlapping transcripts that persisted until lysis. Five very strong, simultaneously active, and probably unregulated early promoters and a single positively regulated late promoter were identified. The late promoter had an extended -10 sequence, had a significant basal level of activity in the uninduced slate, and was induced to high activity by a phage gene product. The complex overlapping pattern of transcripts resulted from the action of the multiple early promoters, inefficient termination of transcription, and (possibly) processing of a late precursor transcript(s). Phage proteins were not required for these processes, and the host RNA polymerase was probably used for both early and late transcription |
doi_str_mv | 10.1128/JB.180.17.4487-4496.1998 |
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(New Zealand Dairy Research Institute, Palmerston North, New Zealand.) ; Schofield, K ; Waterfield, N.R ; Polzin, K.M</creator><creatorcontrib>Lubbers, M.W. (New Zealand Dairy Research Institute, Palmerston North, New Zealand.) ; Schofield, K ; Waterfield, N.R ; Polzin, K.M</creatorcontrib><description>A detailed transcription map of the prolate-headed lactococcal phage c2 has been constructed. Transcription of about one-third of the genome, encoding 22 open reading frames, began within the first 2 min of infection and produced at least 12 overlapping transcripts that persisted until lysis occurred at 30 min after initiation of infection. The remaining two-thirds of the genome, encoding 17 open reading frames, was divergently transcribed, beginning between 4 and 6 min after initiation of infection, and resulted in at least 18 overlapping transcripts that persisted until lysis. Five very strong, simultaneously active, and probably unregulated early promoters and a single positively regulated late promoter were identified. The late promoter had an extended -10 sequence, had a significant basal level of activity in the uninduced slate, and was induced to high activity by a phage gene product. The complex overlapping pattern of transcripts resulted from the action of the multiple early promoters, inefficient termination of transcription, and (possibly) processing of a late precursor transcript(s). Phage proteins were not required for these processes, and the host RNA polymerase was probably used for both early and late transcription</description><identifier>ISSN: 0021-9193</identifier><identifier>EISSN: 1098-5530</identifier><identifier>EISSN: 1067-8832</identifier><identifier>DOI: 10.1128/JB.180.17.4487-4496.1998</identifier><identifier>PMID: 9721287</identifier><identifier>CODEN: JOBAAY</identifier><language>eng</language><publisher>United States: American Society for Microbiology</publisher><subject>ARN MENSAJERO ; ARN MESSAGER ; Bacteria ; BACTERIOFAGOS ; Bacteriology ; BACTERIOPHAGE ; BACTERIOPHAGES ; Bacteriophages - genetics ; Base Sequence ; DNA Primers ; DNA, Viral ; EARLY PROMOTERS ; EARLY TRANSCRIPTION ; EXPRESION GENICA ; EXPRESSION DES GENES ; GENE EXPRESSION ; Genetics ; GENOMAS ; GENOME ; GENOMES ; HOSTS ; HOTE ; HUESPEDES ; LACTOCOCCUS ; Lactococcus - virology ; LATE PROMOTERS ; LATE TRANSCRIPTION ; MESSENGER RNA ; NUCLEOTIDE SEQUENCE ; OPEN READING FRAMES ; Promoter Regions, Genetic ; PROMOTERS ; RNA Processing, Post-Transcriptional ; SECUENCIA NUCLEOTIDICA ; SEQUENCE NUCLEOTIDIQUE ; Terminator Regions, Genetic ; TRANSCRIPCION ; TRANSCRIPTION ; TRANSCRIPTION MAPS ; Transcription, Genetic ; Up-Regulation</subject><ispartof>Journal of Bacteriology, 1998-09, Vol.180 (17), p.4487-4496</ispartof><rights>Copyright American Society for Microbiology Sep 1998</rights><rights>Copyright © 1998, American Society for Microbiology 1998</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c521t-c7c983a654da011c97f8bb67ddc38bfc98480b3d5db0e045631110ab45e158743</citedby><cites>FETCH-LOGICAL-c521t-c7c983a654da011c97f8bb67ddc38bfc98480b3d5db0e045631110ab45e158743</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC107459/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC107459/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/9721287$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Lubbers, M.W. (New Zealand Dairy Research Institute, Palmerston North, New Zealand.)</creatorcontrib><creatorcontrib>Schofield, K</creatorcontrib><creatorcontrib>Waterfield, N.R</creatorcontrib><creatorcontrib>Polzin, K.M</creatorcontrib><title>Transcription analysis of the prolate-headed lactococcal bacteriophage c2</title><title>Journal of Bacteriology</title><addtitle>J Bacteriol</addtitle><description>A detailed transcription map of the prolate-headed lactococcal phage c2 has been constructed. Transcription of about one-third of the genome, encoding 22 open reading frames, began within the first 2 min of infection and produced at least 12 overlapping transcripts that persisted until lysis occurred at 30 min after initiation of infection. The remaining two-thirds of the genome, encoding 17 open reading frames, was divergently transcribed, beginning between 4 and 6 min after initiation of infection, and resulted in at least 18 overlapping transcripts that persisted until lysis. Five very strong, simultaneously active, and probably unregulated early promoters and a single positively regulated late promoter were identified. The late promoter had an extended -10 sequence, had a significant basal level of activity in the uninduced slate, and was induced to high activity by a phage gene product. The complex overlapping pattern of transcripts resulted from the action of the multiple early promoters, inefficient termination of transcription, and (possibly) processing of a late precursor transcript(s). Phage proteins were not required for these processes, and the host RNA polymerase was probably used for both early and late transcription</description><subject>ARN MENSAJERO</subject><subject>ARN MESSAGER</subject><subject>Bacteria</subject><subject>BACTERIOFAGOS</subject><subject>Bacteriology</subject><subject>BACTERIOPHAGE</subject><subject>BACTERIOPHAGES</subject><subject>Bacteriophages - genetics</subject><subject>Base Sequence</subject><subject>DNA Primers</subject><subject>DNA, Viral</subject><subject>EARLY PROMOTERS</subject><subject>EARLY TRANSCRIPTION</subject><subject>EXPRESION GENICA</subject><subject>EXPRESSION DES GENES</subject><subject>GENE EXPRESSION</subject><subject>Genetics</subject><subject>GENOMAS</subject><subject>GENOME</subject><subject>GENOMES</subject><subject>HOSTS</subject><subject>HOTE</subject><subject>HUESPEDES</subject><subject>LACTOCOCCUS</subject><subject>Lactococcus - virology</subject><subject>LATE PROMOTERS</subject><subject>LATE TRANSCRIPTION</subject><subject>MESSENGER RNA</subject><subject>NUCLEOTIDE SEQUENCE</subject><subject>OPEN READING FRAMES</subject><subject>Promoter Regions, Genetic</subject><subject>PROMOTERS</subject><subject>RNA Processing, Post-Transcriptional</subject><subject>SECUENCIA NUCLEOTIDICA</subject><subject>SEQUENCE NUCLEOTIDIQUE</subject><subject>Terminator Regions, Genetic</subject><subject>TRANSCRIPCION</subject><subject>TRANSCRIPTION</subject><subject>TRANSCRIPTION MAPS</subject><subject>Transcription, Genetic</subject><subject>Up-Regulation</subject><issn>0021-9193</issn><issn>1098-5530</issn><issn>1067-8832</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUFv1DAQhS0EKkvhJyBFHLhl8cR2bB840IqWVpU40J6tseNsvMrGwc6C-u_xqqu2cOE0I817b8b-CKmArgEa9en6bA2q9HLNuZI157pdg9bqBVkB1aoWgtGXZEVpA7UGzV6TNzlvKQXORXNCTrRsSoxckavbhFN2KcxLiFOFE473OeQq9tUy-GpOccTF14PHznfViG6JLjqHY2VL71OI84AbX7nmLXnV45j9u2M9JXcXX2_Pv9U33y-vzr_c1E40sNROOq0YtoJ3SAGclr2ytpVd55iyfRlyRS3rRGepp1y0DAAoWi48CCU5OyWfH3Lnvd35zvlpSTiaOYUdpnsTMZi_J1MYzCb-MkAlF7r4Px79Kf7c-7yYXcjOjyNOPu6zkUwpxdv_C6EVIJmAIvzwj3Ab96n8ZDZNI6lUrWRFpB5ELsWck-8fLwZqDkzN9ZkpTA1Ic2BqDkzNgWmxvn_-4kfjEeLT_iFsht8heYN5Z7b2edxTSI_R4CaFbO5-lHhNKWNUsD9aabG9</recordid><startdate>19980901</startdate><enddate>19980901</enddate><creator>Lubbers, M.W. (New Zealand Dairy Research Institute, Palmerston North, New Zealand.)</creator><creator>Schofield, K</creator><creator>Waterfield, N.R</creator><creator>Polzin, K.M</creator><general>American Society for Microbiology</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7TM</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>19980901</creationdate><title>Transcription analysis of the prolate-headed lactococcal bacteriophage c2</title><author>Lubbers, M.W. (New Zealand Dairy Research Institute, Palmerston North, New Zealand.) ; Schofield, K ; Waterfield, N.R ; Polzin, K.M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c521t-c7c983a654da011c97f8bb67ddc38bfc98480b3d5db0e045631110ab45e158743</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>ARN MENSAJERO</topic><topic>ARN MESSAGER</topic><topic>Bacteria</topic><topic>BACTERIOFAGOS</topic><topic>Bacteriology</topic><topic>BACTERIOPHAGE</topic><topic>BACTERIOPHAGES</topic><topic>Bacteriophages - genetics</topic><topic>Base Sequence</topic><topic>DNA Primers</topic><topic>DNA, Viral</topic><topic>EARLY PROMOTERS</topic><topic>EARLY TRANSCRIPTION</topic><topic>EXPRESION GENICA</topic><topic>EXPRESSION DES GENES</topic><topic>GENE EXPRESSION</topic><topic>Genetics</topic><topic>GENOMAS</topic><topic>GENOME</topic><topic>GENOMES</topic><topic>HOSTS</topic><topic>HOTE</topic><topic>HUESPEDES</topic><topic>LACTOCOCCUS</topic><topic>Lactococcus - virology</topic><topic>LATE PROMOTERS</topic><topic>LATE TRANSCRIPTION</topic><topic>MESSENGER RNA</topic><topic>NUCLEOTIDE SEQUENCE</topic><topic>OPEN READING FRAMES</topic><topic>Promoter Regions, Genetic</topic><topic>PROMOTERS</topic><topic>RNA Processing, Post-Transcriptional</topic><topic>SECUENCIA NUCLEOTIDICA</topic><topic>SEQUENCE NUCLEOTIDIQUE</topic><topic>Terminator Regions, Genetic</topic><topic>TRANSCRIPCION</topic><topic>TRANSCRIPTION</topic><topic>TRANSCRIPTION MAPS</topic><topic>Transcription, Genetic</topic><topic>Up-Regulation</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Lubbers, M.W. (New Zealand Dairy Research Institute, Palmerston North, New Zealand.)</creatorcontrib><creatorcontrib>Schofield, K</creatorcontrib><creatorcontrib>Waterfield, N.R</creatorcontrib><creatorcontrib>Polzin, K.M</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of Bacteriology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Lubbers, M.W. (New Zealand Dairy Research Institute, Palmerston North, New Zealand.)</au><au>Schofield, K</au><au>Waterfield, N.R</au><au>Polzin, K.M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Transcription analysis of the prolate-headed lactococcal bacteriophage c2</atitle><jtitle>Journal of Bacteriology</jtitle><addtitle>J Bacteriol</addtitle><date>1998-09-01</date><risdate>1998</risdate><volume>180</volume><issue>17</issue><spage>4487</spage><epage>4496</epage><pages>4487-4496</pages><issn>0021-9193</issn><eissn>1098-5530</eissn><eissn>1067-8832</eissn><coden>JOBAAY</coden><abstract>A detailed transcription map of the prolate-headed lactococcal phage c2 has been constructed. Transcription of about one-third of the genome, encoding 22 open reading frames, began within the first 2 min of infection and produced at least 12 overlapping transcripts that persisted until lysis occurred at 30 min after initiation of infection. The remaining two-thirds of the genome, encoding 17 open reading frames, was divergently transcribed, beginning between 4 and 6 min after initiation of infection, and resulted in at least 18 overlapping transcripts that persisted until lysis. Five very strong, simultaneously active, and probably unregulated early promoters and a single positively regulated late promoter were identified. The late promoter had an extended -10 sequence, had a significant basal level of activity in the uninduced slate, and was induced to high activity by a phage gene product. The complex overlapping pattern of transcripts resulted from the action of the multiple early promoters, inefficient termination of transcription, and (possibly) processing of a late precursor transcript(s). Phage proteins were not required for these processes, and the host RNA polymerase was probably used for both early and late transcription</abstract><cop>United States</cop><pub>American Society for Microbiology</pub><pmid>9721287</pmid><doi>10.1128/JB.180.17.4487-4496.1998</doi><tpages>10</tpages><oa>free_for_read</oa></addata></record> |
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subjects | ARN MENSAJERO ARN MESSAGER Bacteria BACTERIOFAGOS Bacteriology BACTERIOPHAGE BACTERIOPHAGES Bacteriophages - genetics Base Sequence DNA Primers DNA, Viral EARLY PROMOTERS EARLY TRANSCRIPTION EXPRESION GENICA EXPRESSION DES GENES GENE EXPRESSION Genetics GENOMAS GENOME GENOMES HOSTS HOTE HUESPEDES LACTOCOCCUS Lactococcus - virology LATE PROMOTERS LATE TRANSCRIPTION MESSENGER RNA NUCLEOTIDE SEQUENCE OPEN READING FRAMES Promoter Regions, Genetic PROMOTERS RNA Processing, Post-Transcriptional SECUENCIA NUCLEOTIDICA SEQUENCE NUCLEOTIDIQUE Terminator Regions, Genetic TRANSCRIPCION TRANSCRIPTION TRANSCRIPTION MAPS Transcription, Genetic Up-Regulation |
title | Transcription analysis of the prolate-headed lactococcal bacteriophage c2 |
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