Method for controlling temperature of fuel cell system

The present invention provides a method for controlling the temperature of a fuel cell system by controlling the rotational speeds of a coolant pump and a cooling fan based on the coolant outlet temperature, the amount of heat generated by a fuel cell stack, etc. In particular, the present invention controls the temperature of a fuel cell system by utilizing a controller which receives a coolant outlet temperature from a sensor in a state where a reference temperature for each stage is determined with respect to the coolant outlet temperature and a target rotational speed for each stage is determined based on the coolant outlet temperature. Then the controller performs proportional integral (PI) control with respect to each rotational speed of a coolant pump and a cooling fan at the target rotational speed for each stage determined based on the current coolant outlet temperature detected by the water temperature sensor.