Methods of Predicting Musculoskeletal Disease

Methods of predicting bone or joint disease in a subject are disclosed. Methods of determining the effect of a candidate agent on any subject's risk of developing bone or joint disease are also disclosed. A method for generating a parameter map from a bone image of a subject includes obtaining the bone image of the subject, defining two or more regions of interest (ROIs) in the image, analyzing a plurality of positions in the ROIs to obtain measurements for one or more bone microarchitecture parameters and one or more bone macro-anatomy parameters, and generating the parameter map from the measurements.