METHOD AND SYSTEM FOR SEQUENCE CORRELATION

METHOD AND SYSTEM FOR SEQUENCE CORRELATION

A method and system are provided for evaluating the correlation between sequences by entering segments of one sequence in a database and comparing segments of the other sequence with the index values to find correlated segments. The correlated segments are analysed to determine whether the spacing i...

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Bibliographische Detailangaben
Hauptverfasser: TRIGG LEONARD ERIC, INGLIS STUART JOHN, CLEARY JOHN GERALD, RATHOD MEHUL KAMLESH, LITTIN RICHARD HENRY, WARE DAVID WILLIAM, GAYLARD GRAHAM CHARLES, IRVINE SEAN ALISTAIR
Format: Patent
Sprache:eng
Schlagworte:
INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTEDFOR SPECIFIC APPLICATION FIELDS
PHYSICS
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Beschreibung
Zusammenfassung:A method and system are provided for evaluating the correlation between sequences by entering segments of one sequence in a database and comparing segments of the other sequence with the index values to find correlated segments. The correlated segments are analysed to determine whether the spacing is within a defined range indicating that a correlation threshold has been met. A processing methodology may be employed whereby a coarse potential alignment algorithm is first applied to determine potential alignment at a plurality of potential alignment positions, which are filtered based on alignment scores, and a fine alignment algorithm is then applied.