Navigation system with location correction mechanism and method of operation thereof

A navigation system includes: a communication circuit configured to: receive a base station data including an actual location and a satellite provided reference location from a base station, and transfer the base station data to an artificial intelligence (AI) correction calculator, already trained to negate a multipath interference of a position satellite; a control circuit, coupled to the communication circuit, configured to: calculate a real-time kinematics (RTK) correction, by the AI correction calculator, based on the satellite provided reference location and the actual location; and enable the communication circuit to transmit the RTK correction by an over the air (OTA) communication to the base station including the base station transferring the RTK correction to a device for correcting the satellite provided reference location to a real-world location and displaying on the device.