Processing out of order writes in a log structured file system for improved garbage collection

Improving performance of garbage collection (GC) processes in a deduplicated file system having a layered processing architecture that maintains a log structured file system storing data and metadata in an append-only log arranged as a monotonically increasing log data structure of a plurality of data blocks wherein a head of the log increases in chronological order and no allocated data block is overwritten. The storage layer reserves a set of data block IDs within the log specifically for the garbage collection process, and assigns data blocks from the reserved set to GC I/O processes requiring acknowledgment in a possible out-of-order manner relative to an order of data blocks in the log. It strictly imposes using in-order I/O acknowledgement for other non-GC processes using the storage layer, where these processes may be deduplication backup processes using a segment store layer at the same protocol level as the GC layer.