System and method for supporting application interoperation in a transactional middleware environment

A system and method can support application interoperation in a transactional middleware environment. A first transaction server operates to initiate a global transaction, wherein the first transaction server that is associated with a first format identifier (ID), and wherein the global transaction includes a plurality of branches and each said branch is associated with an individual branch qualifier. Furthermore, the first transaction server can direct at least one branch of the global transaction from the first transaction server to a second transactional server, wherein each said transactional server is associated with a second format identifier (ID), and configure a plurality of branches in the global transaction to share a common format identifier (ID).