Image alignment correction for imaging processing during operation of an unmanned aerial vehicle

Described is an, such as an unmanned aerial vehicle ("UAV"), that includes stereo pairs of imaging element, each imaging element including a region of interest controller. The region of interest controller for an imaging element of the stereo pair receives movement information affecting the imaging element and selects a portion of pixels of a digital image formed by the imaging element. The portion of pixels are provided to an image processor that utilizes the portion of pixels to determine depth information for objects represented by the pixels.