DNA POLYMERASE OF GAMMA HERPES VIRUSES ASSOCIATED WITH KAPOSI'S SARCOMA AND RETROPERITONEAL FIBROMATOSIS

This invention provides isolated polynucleotides encoding DNA polymerases of three members of a subfamily of gamma herpes viruses. Two were obtained from macaque monkeys affected with retroperitoneal fibromatosis, the other from human AIDS patients affected with Kaposi's sarcoma. A 454-base pai...

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Hauptverfasser: GEORGE J. TODARO, KURT STRAND, TIMOTHY M. ROSE, MARNIX L. BOSCH
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KURT STRAND
TIMOTHY M. ROSE
MARNIX L. BOSCH
description This invention provides isolated polynucleotides encoding DNA polymerases of three members of a subfamily of gamma herpes viruses. Two were obtained from macaque monkeys affected with retroperitoneal fibromatosis, the other from human AIDS patients affected with Kaposi's sarcoma. A 454-base pair fragment encoding a region near the active site of the DNA polymerase is 69-83 percent identical amongst the three viruses, but only 54-68 percent identical with other known gamma herpes sequences and < 55 percent identical with alpha and beta herpes sequences. Also provided are ploynucleotides encoding DNA polymerase from related viruses in the RFHV/KSHV subfamily. Polynucleotides prepared according to the sequence data can be used as reagents to detect and characterize related sequences. Such reagents may be used to detect members of the RFHV/KSHV subfamily, including but not limited to RFHV, RFHV2, and KSHV. Corresponding polypeptides and peptide fragments may be obtained by expressing the polynucleotide or by chemical synthesis. They may be used for detecting specific antibody potentially present in the serum of infected subjects. They may also be used for designing or screening pharmaceutical compounds that limit viral replication by inhibiting DNA polymerase activity. Esta invencion proporciona polinucleotidos aislados que codifican ADN polimerasas de tres miembros de una sub-familia de los virus del herpes Gama. Dos fueron obtenidos de monos macacos afectados con fibromatosis retroperitoneal, el otro de pacientes humanos de SIDA afectados con sarcoma de kaposi. Un fragmento de 454 pares de bases codificando una region cercana al sitio activo de la ADN polimerasa es de 69-83% idéntico en los tres virus, pero solamente 54-68% idéntico a otras secuencias de herpes gama conocidas y menos de 55% idéntico a secuencias de herpes alfa y beta. También se proporcionan polinucleotidos que codifican ADN polimerasa de virus relacionados en la sub-familia RFHV/KSHV. Los nucleotidos preparados de acuerdo con los datos de secuencia pueden ser usados como reactivos para detectar y caracterizar secuencias relacionadas. Tales reactivos pueden ser usados para detectar miembros de la sub-familia RFHV/KSHV, incluyendo pero sin limitarse a RFHV, RFHV2 y KSHV. Polipéptidos y fragmentos de péptidos correspondientes pueden ser obtenidos expresando el polinucleotido o mediante síntesis química. Pueden usarse para detectar anticuerpo específico presente en el suero de sujetos infectado
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BOSCH</creatorcontrib><description>This invention provides isolated polynucleotides encoding DNA polymerases of three members of a subfamily of gamma herpes viruses. Two were obtained from macaque monkeys affected with retroperitoneal fibromatosis, the other from human AIDS patients affected with Kaposi's sarcoma. A 454-base pair fragment encoding a region near the active site of the DNA polymerase is 69-83 percent identical amongst the three viruses, but only 54-68 percent identical with other known gamma herpes sequences and &lt; 55 percent identical with alpha and beta herpes sequences. Also provided are ploynucleotides encoding DNA polymerase from related viruses in the RFHV/KSHV subfamily. Polynucleotides prepared according to the sequence data can be used as reagents to detect and characterize related sequences. Such reagents may be used to detect members of the RFHV/KSHV subfamily, including but not limited to RFHV, RFHV2, and KSHV. Corresponding polypeptides and peptide fragments may be obtained by expressing the polynucleotide or by chemical synthesis. They may be used for detecting specific antibody potentially present in the serum of infected subjects. They may also be used for designing or screening pharmaceutical compounds that limit viral replication by inhibiting DNA polymerase activity. Esta invencion proporciona polinucleotidos aislados que codifican ADN polimerasas de tres miembros de una sub-familia de los virus del herpes Gama. Dos fueron obtenidos de monos macacos afectados con fibromatosis retroperitoneal, el otro de pacientes humanos de SIDA afectados con sarcoma de kaposi. Un fragmento de 454 pares de bases codificando una region cercana al sitio activo de la ADN polimerasa es de 69-83% idéntico en los tres virus, pero solamente 54-68% idéntico a otras secuencias de herpes gama conocidas y menos de 55% idéntico a secuencias de herpes alfa y beta. También se proporcionan polinucleotidos que codifican ADN polimerasa de virus relacionados en la sub-familia RFHV/KSHV. Los nucleotidos preparados de acuerdo con los datos de secuencia pueden ser usados como reactivos para detectar y caracterizar secuencias relacionadas. Tales reactivos pueden ser usados para detectar miembros de la sub-familia RFHV/KSHV, incluyendo pero sin limitarse a RFHV, RFHV2 y KSHV. Polipéptidos y fragmentos de péptidos correspondientes pueden ser obtenidos expresando el polinucleotido o mediante síntesis química. Pueden usarse para detectar anticuerpo específico presente en el suero de sujetos infectados. 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TODARO</creatorcontrib><creatorcontrib>KURT STRAND</creatorcontrib><creatorcontrib>TIMOTHY M. ROSE</creatorcontrib><creatorcontrib>MARNIX L. BOSCH</creatorcontrib><title>DNA POLYMERASE OF GAMMA HERPES VIRUSES ASSOCIATED WITH KAPOSI'S SARCOMA AND RETROPERITONEAL FIBROMATOSIS</title><description>This invention provides isolated polynucleotides encoding DNA polymerases of three members of a subfamily of gamma herpes viruses. Two were obtained from macaque monkeys affected with retroperitoneal fibromatosis, the other from human AIDS patients affected with Kaposi's sarcoma. A 454-base pair fragment encoding a region near the active site of the DNA polymerase is 69-83 percent identical amongst the three viruses, but only 54-68 percent identical with other known gamma herpes sequences and &lt; 55 percent identical with alpha and beta herpes sequences. Also provided are ploynucleotides encoding DNA polymerase from related viruses in the RFHV/KSHV subfamily. Polynucleotides prepared according to the sequence data can be used as reagents to detect and characterize related sequences. Such reagents may be used to detect members of the RFHV/KSHV subfamily, including but not limited to RFHV, RFHV2, and KSHV. Corresponding polypeptides and peptide fragments may be obtained by expressing the polynucleotide or by chemical synthesis. They may be used for detecting specific antibody potentially present in the serum of infected subjects. They may also be used for designing or screening pharmaceutical compounds that limit viral replication by inhibiting DNA polymerase activity. Esta invencion proporciona polinucleotidos aislados que codifican ADN polimerasas de tres miembros de una sub-familia de los virus del herpes Gama. Dos fueron obtenidos de monos macacos afectados con fibromatosis retroperitoneal, el otro de pacientes humanos de SIDA afectados con sarcoma de kaposi. Un fragmento de 454 pares de bases codificando una region cercana al sitio activo de la ADN polimerasa es de 69-83% idéntico en los tres virus, pero solamente 54-68% idéntico a otras secuencias de herpes gama conocidas y menos de 55% idéntico a secuencias de herpes alfa y beta. También se proporcionan polinucleotidos que codifican ADN polimerasa de virus relacionados en la sub-familia RFHV/KSHV. Los nucleotidos preparados de acuerdo con los datos de secuencia pueden ser usados como reactivos para detectar y caracterizar secuencias relacionadas. Tales reactivos pueden ser usados para detectar miembros de la sub-familia RFHV/KSHV, incluyendo pero sin limitarse a RFHV, RFHV2 y KSHV. Polipéptidos y fragmentos de péptidos correspondientes pueden ser obtenidos expresando el polinucleotido o mediante síntesis química. Pueden usarse para detectar anticuerpo específico presente en el suero de sujetos infectados. También pueden usarse para diseñar o analizar compuestos farmacéuticos que limitan la replicacion viral inhibiendo la actividad de la ADN polimerasa.</description><subject>BEER</subject><subject>BIOCHEMISTRY</subject><subject>CHEMISTRY</subject><subject>COMPOSITIONS OR TEST PAPERS THEREFOR</subject><subject>COMPOSITIONS THEREOF</subject><subject>CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL ORENZYMOLOGICAL PROCESSES</subject><subject>CULTURE MEDIA</subject><subject>ENZYMOLOGY</subject><subject>FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIREDCHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERSFROM A RACEMIC MIXTURE</subject><subject>HUMAN NECESSITIES</subject><subject>HYGIENE</subject><subject>MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEICACIDS OR MICROORGANISMS</subject><subject>MEDICAL OR VETERINARY SCIENCE</subject><subject>METALLURGY</subject><subject>MICROBIOLOGY</subject><subject>MICROORGANISMS OR ENZYMES</subject><subject>MUTATION OR GENETIC ENGINEERING</subject><subject>ORGANIC CHEMISTRY</subject><subject>PEPTIDES</subject><subject>PREPARATIONS FOR MEDICAL, DENTAL, OR TOILET PURPOSES</subject><subject>PROCESSES OF PREPARING SUCH COMPOSITIONS</subject><subject>PROCESSES USING MICROORGANISMS</subject><subject>PROPAGATING, PRESERVING OR MAINTAINING MICROORGANISMS</subject><subject>SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS ORMEDICINAL PREPARATIONS</subject><subject>SPIRITS</subject><subject>VINEGAR</subject><subject>WINE</subject><fulltext>true</fulltext><rsrctype>patent</rsrctype><creationdate>1998</creationdate><recordtype>patent</recordtype><sourceid>EVB</sourceid><recordid>eNqFyrsOgkAQQFEaC6N-g9NZmRBppBxhkI0ss5lZXxUhZo2FURL8_7iFvdUt7pkmj7JFcNxcLQkqAVewR2sRahJHCicjR41FVS4MeirhbHwNB3SsZqWgKAVHj20JQl7YkRjPLWEDldlJfD5KnSeTe_8cw-LXWbKsyBf1OgzvLoxDfwuv8OnsJd-maZZvMPsvvmfzNTw</recordid><startdate>19980930</startdate><enddate>19980930</enddate><creator>GEORGE J. TODARO</creator><creator>KURT STRAND</creator><creator>TIMOTHY M. ROSE</creator><creator>MARNIX L. BOSCH</creator><scope>EVB</scope></search><sort><creationdate>19980930</creationdate><title>DNA POLYMERASE OF GAMMA HERPES VIRUSES ASSOCIATED WITH KAPOSI'S SARCOMA AND RETROPERITONEAL FIBROMATOSIS</title><author>GEORGE J. TODARO ; KURT STRAND ; TIMOTHY M. ROSE ; MARNIX L. BOSCH</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-epo_espacenet_MX9800392A3</frbrgroupid><rsrctype>patents</rsrctype><prefilter>patents</prefilter><language>eng ; spa</language><creationdate>1998</creationdate><topic>BEER</topic><topic>BIOCHEMISTRY</topic><topic>CHEMISTRY</topic><topic>COMPOSITIONS OR TEST PAPERS THEREFOR</topic><topic>COMPOSITIONS THEREOF</topic><topic>CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL ORENZYMOLOGICAL PROCESSES</topic><topic>CULTURE MEDIA</topic><topic>ENZYMOLOGY</topic><topic>FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIREDCHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERSFROM A RACEMIC MIXTURE</topic><topic>HUMAN NECESSITIES</topic><topic>HYGIENE</topic><topic>MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEICACIDS OR MICROORGANISMS</topic><topic>MEDICAL OR VETERINARY SCIENCE</topic><topic>METALLURGY</topic><topic>MICROBIOLOGY</topic><topic>MICROORGANISMS OR ENZYMES</topic><topic>MUTATION OR GENETIC ENGINEERING</topic><topic>ORGANIC CHEMISTRY</topic><topic>PEPTIDES</topic><topic>PREPARATIONS FOR MEDICAL, DENTAL, OR TOILET PURPOSES</topic><topic>PROCESSES OF PREPARING SUCH COMPOSITIONS</topic><topic>PROCESSES USING MICROORGANISMS</topic><topic>PROPAGATING, PRESERVING OR MAINTAINING MICROORGANISMS</topic><topic>SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS ORMEDICINAL PREPARATIONS</topic><topic>SPIRITS</topic><topic>VINEGAR</topic><topic>WINE</topic><toplevel>online_resources</toplevel><creatorcontrib>GEORGE J. TODARO</creatorcontrib><creatorcontrib>KURT STRAND</creatorcontrib><creatorcontrib>TIMOTHY M. ROSE</creatorcontrib><creatorcontrib>MARNIX L. BOSCH</creatorcontrib><collection>esp@cenet</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>GEORGE J. TODARO</au><au>KURT STRAND</au><au>TIMOTHY M. ROSE</au><au>MARNIX L. BOSCH</au><format>patent</format><genre>patent</genre><ristype>GEN</ristype><title>DNA POLYMERASE OF GAMMA HERPES VIRUSES ASSOCIATED WITH KAPOSI'S SARCOMA AND RETROPERITONEAL FIBROMATOSIS</title><date>1998-09-30</date><risdate>1998</risdate><abstract>This invention provides isolated polynucleotides encoding DNA polymerases of three members of a subfamily of gamma herpes viruses. Two were obtained from macaque monkeys affected with retroperitoneal fibromatosis, the other from human AIDS patients affected with Kaposi's sarcoma. A 454-base pair fragment encoding a region near the active site of the DNA polymerase is 69-83 percent identical amongst the three viruses, but only 54-68 percent identical with other known gamma herpes sequences and &lt; 55 percent identical with alpha and beta herpes sequences. Also provided are ploynucleotides encoding DNA polymerase from related viruses in the RFHV/KSHV subfamily. Polynucleotides prepared according to the sequence data can be used as reagents to detect and characterize related sequences. Such reagents may be used to detect members of the RFHV/KSHV subfamily, including but not limited to RFHV, RFHV2, and KSHV. Corresponding polypeptides and peptide fragments may be obtained by expressing the polynucleotide or by chemical synthesis. They may be used for detecting specific antibody potentially present in the serum of infected subjects. They may also be used for designing or screening pharmaceutical compounds that limit viral replication by inhibiting DNA polymerase activity. Esta invencion proporciona polinucleotidos aislados que codifican ADN polimerasas de tres miembros de una sub-familia de los virus del herpes Gama. Dos fueron obtenidos de monos macacos afectados con fibromatosis retroperitoneal, el otro de pacientes humanos de SIDA afectados con sarcoma de kaposi. Un fragmento de 454 pares de bases codificando una region cercana al sitio activo de la ADN polimerasa es de 69-83% idéntico en los tres virus, pero solamente 54-68% idéntico a otras secuencias de herpes gama conocidas y menos de 55% idéntico a secuencias de herpes alfa y beta. También se proporcionan polinucleotidos que codifican ADN polimerasa de virus relacionados en la sub-familia RFHV/KSHV. Los nucleotidos preparados de acuerdo con los datos de secuencia pueden ser usados como reactivos para detectar y caracterizar secuencias relacionadas. Tales reactivos pueden ser usados para detectar miembros de la sub-familia RFHV/KSHV, incluyendo pero sin limitarse a RFHV, RFHV2 y KSHV. Polipéptidos y fragmentos de péptidos correspondientes pueden ser obtenidos expresando el polinucleotido o mediante síntesis química. Pueden usarse para detectar anticuerpo específico presente en el suero de sujetos infectados. También pueden usarse para diseñar o analizar compuestos farmacéuticos que limitan la replicacion viral inhibiendo la actividad de la ADN polimerasa.</abstract><edition>6</edition><oa>free_for_read</oa></addata></record>
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subjects BEER
BIOCHEMISTRY
CHEMISTRY
COMPOSITIONS OR TEST PAPERS THEREFOR
COMPOSITIONS THEREOF
CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL ORENZYMOLOGICAL PROCESSES
CULTURE MEDIA
ENZYMOLOGY
FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIREDCHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERSFROM A RACEMIC MIXTURE
HUMAN NECESSITIES
HYGIENE
MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEICACIDS OR MICROORGANISMS
MEDICAL OR VETERINARY SCIENCE
METALLURGY
MICROBIOLOGY
MICROORGANISMS OR ENZYMES
MUTATION OR GENETIC ENGINEERING
ORGANIC CHEMISTRY
PEPTIDES
PREPARATIONS FOR MEDICAL, DENTAL, OR TOILET PURPOSES
PROCESSES OF PREPARING SUCH COMPOSITIONS
PROCESSES USING MICROORGANISMS
PROPAGATING, PRESERVING OR MAINTAINING MICROORGANISMS
SPECIFIC THERAPEUTIC ACTIVITY OF CHEMICAL COMPOUNDS ORMEDICINAL PREPARATIONS
SPIRITS
VINEGAR
WINE
title DNA POLYMERASE OF GAMMA HERPES VIRUSES ASSOCIATED WITH KAPOSI'S SARCOMA AND RETROPERITONEAL FIBROMATOSIS
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