SYSTEM AND METHOD FOR IMPROVED ESTIMATION OF FUNCTIONAL POTENTIAL OF GENOMES AND METAGENOMES

SYSTEM AND METHOD FOR IMPROVED ESTIMATION OF FUNCTIONAL POTENTIAL OF GENOMES AND METAGENOMES

A system and method for estimation of functional potential of pathways in genomes/ meta-genomes is provided. Initially seed modules are identified and a multi-dimensional tag map is created. Further, pathway annotation is done using a novel 6Q annotation step. Hidden Markov Model (HMM) based search...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Anand, Swadha, Bhusan, Kuntal Kumar, Bhatt, Vineet, Mohapatra, Anwesha, Mande, Sharmila Shekhar
Format: Patent
Sprache:eng ; fre ; ger
Schlagworte:
INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTEDFOR SPECIFIC APPLICATION FIELDS
PHYSICS
Online-Zugang:Volltext bestellen
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page
container_title
container_volume
creator Anand, Swadha
Bhusan, Kuntal Kumar
Bhatt, Vineet
Mohapatra, Anwesha
Mande, Sharmila Shekhar
description A system and method for estimation of functional potential of pathways in genomes/ meta-genomes is provided. Initially seed modules are identified and a multi-dimensional tag map is created. Further, pathway annotation is done using a novel 6Q annotation step. Hidden Markov Model (HMM) based search augmented with an analysis of gene context is used to refine the modules using a graph theory based approach. The method uses the multidimensional module tag map to build a backend knowledge base and use the same for an iterative literature search to verify the clustered organization of genes within a pathway. Finally, a score is assigned to compute the contribution of each pathway within the genome/meta-genome.
format Patent
fullrecord <record><control><sourceid>epo_EVB</sourceid><recordid>TN_cdi_epo_espacenet_EP3343416C0</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>EP3343416C0</sourcerecordid><originalsourceid>FETCH-epo_espacenet_EP3343416C03</originalsourceid><addsrcrecordid>eNrjZIgJjgwOcfVVcPRzUfB1DfHwd1Fw8w9S8PQNCPIPc3VRcA0O8fR1DPH091Pwd1NwC_VzBrEdfRQC_ENc_UI8gSyguLurn7-vazDMFEcon4eBNS0xpziVF0pzMyi4uYY4e-imFuTHpxYXJCan5qWWxLsGGBubGJsYmjkbGBOhBABjtzID</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>patent</recordtype></control><display><type>patent</type><title>SYSTEM AND METHOD FOR IMPROVED ESTIMATION OF FUNCTIONAL POTENTIAL OF GENOMES AND METAGENOMES</title><source>esp@cenet</source><creator>Anand, Swadha ; Bhusan, Kuntal Kumar ; Bhatt, Vineet ; Mohapatra, Anwesha ; Mande, Sharmila Shekhar</creator><creatorcontrib>Anand, Swadha ; Bhusan, Kuntal Kumar ; Bhatt, Vineet ; Mohapatra, Anwesha ; Mande, Sharmila Shekhar</creatorcontrib><description>A system and method for estimation of functional potential of pathways in genomes/ meta-genomes is provided. Initially seed modules are identified and a multi-dimensional tag map is created. Further, pathway annotation is done using a novel 6Q annotation step. Hidden Markov Model (HMM) based search augmented with an analysis of gene context is used to refine the modules using a graph theory based approach. The method uses the multidimensional module tag map to build a backend knowledge base and use the same for an iterative literature search to verify the clustered organization of genes within a pathway. Finally, a score is assigned to compute the contribution of each pathway within the genome/meta-genome.</description><language>eng ; fre ; ger</language><subject>INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTEDFOR SPECIFIC APPLICATION FIELDS ; PHYSICS</subject><creationdate>2024</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://worldwide.espacenet.com/publicationDetails/biblio?FT=D&amp;date=20240306&amp;DB=EPODOC&amp;CC=EP&amp;NR=3343416C0$$EHTML$$P50$$Gepo$$Hfree_for_read</linktohtml><link.rule.ids>230,308,780,885,25564,76547</link.rule.ids><linktorsrc>$$Uhttps://worldwide.espacenet.com/publicationDetails/biblio?FT=D&amp;date=20240306&amp;DB=EPODOC&amp;CC=EP&amp;NR=3343416C0$$EView_record_in_European_Patent_Office$$FView_record_in_$$GEuropean_Patent_Office$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Anand, Swadha</creatorcontrib><creatorcontrib>Bhusan, Kuntal Kumar</creatorcontrib><creatorcontrib>Bhatt, Vineet</creatorcontrib><creatorcontrib>Mohapatra, Anwesha</creatorcontrib><creatorcontrib>Mande, Sharmila Shekhar</creatorcontrib><title>SYSTEM AND METHOD FOR IMPROVED ESTIMATION OF FUNCTIONAL POTENTIAL OF GENOMES AND METAGENOMES</title><description>A system and method for estimation of functional potential of pathways in genomes/ meta-genomes is provided. Initially seed modules are identified and a multi-dimensional tag map is created. Further, pathway annotation is done using a novel 6Q annotation step. Hidden Markov Model (HMM) based search augmented with an analysis of gene context is used to refine the modules using a graph theory based approach. The method uses the multidimensional module tag map to build a backend knowledge base and use the same for an iterative literature search to verify the clustered organization of genes within a pathway. Finally, a score is assigned to compute the contribution of each pathway within the genome/meta-genome.</description><subject>INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTEDFOR SPECIFIC APPLICATION FIELDS</subject><subject>PHYSICS</subject><fulltext>true</fulltext><rsrctype>patent</rsrctype><creationdate>2024</creationdate><recordtype>patent</recordtype><sourceid>EVB</sourceid><recordid>eNrjZIgJjgwOcfVVcPRzUfB1DfHwd1Fw8w9S8PQNCPIPc3VRcA0O8fR1DPH091Pwd1NwC_VzBrEdfRQC_ENc_UI8gSyguLurn7-vazDMFEcon4eBNS0xpziVF0pzMyi4uYY4e-imFuTHpxYXJCan5qWWxLsGGBubGJsYmjkbGBOhBABjtzID</recordid><startdate>20240306</startdate><enddate>20240306</enddate><creator>Anand, Swadha</creator><creator>Bhusan, Kuntal Kumar</creator><creator>Bhatt, Vineet</creator><creator>Mohapatra, Anwesha</creator><creator>Mande, Sharmila Shekhar</creator><scope>EVB</scope></search><sort><creationdate>20240306</creationdate><title>SYSTEM AND METHOD FOR IMPROVED ESTIMATION OF FUNCTIONAL POTENTIAL OF GENOMES AND METAGENOMES</title><author>Anand, Swadha ; Bhusan, Kuntal Kumar ; Bhatt, Vineet ; Mohapatra, Anwesha ; Mande, Sharmila Shekhar</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-epo_espacenet_EP3343416C03</frbrgroupid><rsrctype>patents</rsrctype><prefilter>patents</prefilter><language>eng ; fre ; ger</language><creationdate>2024</creationdate><topic>INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTEDFOR SPECIFIC APPLICATION FIELDS</topic><topic>PHYSICS</topic><toplevel>online_resources</toplevel><creatorcontrib>Anand, Swadha</creatorcontrib><creatorcontrib>Bhusan, Kuntal Kumar</creatorcontrib><creatorcontrib>Bhatt, Vineet</creatorcontrib><creatorcontrib>Mohapatra, Anwesha</creatorcontrib><creatorcontrib>Mande, Sharmila Shekhar</creatorcontrib><collection>esp@cenet</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Anand, Swadha</au><au>Bhusan, Kuntal Kumar</au><au>Bhatt, Vineet</au><au>Mohapatra, Anwesha</au><au>Mande, Sharmila Shekhar</au><format>patent</format><genre>patent</genre><ristype>GEN</ristype><title>SYSTEM AND METHOD FOR IMPROVED ESTIMATION OF FUNCTIONAL POTENTIAL OF GENOMES AND METAGENOMES</title><date>2024-03-06</date><risdate>2024</risdate><abstract>A system and method for estimation of functional potential of pathways in genomes/ meta-genomes is provided. Initially seed modules are identified and a multi-dimensional tag map is created. Further, pathway annotation is done using a novel 6Q annotation step. Hidden Markov Model (HMM) based search augmented with an analysis of gene context is used to refine the modules using a graph theory based approach. The method uses the multidimensional module tag map to build a backend knowledge base and use the same for an iterative literature search to verify the clustered organization of genes within a pathway. Finally, a score is assigned to compute the contribution of each pathway within the genome/meta-genome.</abstract><oa>free_for_read</oa></addata></record>
fulltext fulltext_linktorsrc
identifier
ispartof
issn
language eng ; fre ; ger
recordid cdi_epo_espacenet_EP3343416C0
source esp@cenet
subjects INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTEDFOR SPECIFIC APPLICATION FIELDS
PHYSICS
title SYSTEM AND METHOD FOR IMPROVED ESTIMATION OF FUNCTIONAL POTENTIAL OF GENOMES AND METAGENOMES
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-28T06%3A33%3A31IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-epo_EVB&rft_val_fmt=info:ofi/fmt:kev:mtx:patent&rft.genre=patent&rft.au=Anand,%20Swadha&rft.date=2024-03-06&rft_id=info:doi/&rft_dat=%3Cepo_EVB%3EEP3343416C0%3C/epo_EVB%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true