NUCLEIC ACID INFORMATION PROCESSING DEVICE AND PROCESSING METHOD THEREOF

It is an object to easily obtain hybridization results using a probe set with no time limit for use, that is equivalent to a DNA microarray. A nucleic acid information processing device includes: a storage unit that stores first base sequence information including information on a plurality of base...

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Bibliographische Detailangaben
Hauptverfasser: NASU, HISANORI, YAMAKAWA, TAKEHIRO, TSUJIMOTO, ATSUMI, ONO, HIROAKI
Format: Patent
Sprache:eng ; fre ; ger
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Zusammenfassung:It is an object to easily obtain hybridization results using a probe set with no time limit for use, that is equivalent to a DNA microarray. A nucleic acid information processing device includes: a storage unit that stores first base sequence information including information on a plurality of base sequences, and second base sequence information including information on a plurality of base sequences; a threshold value receiving unit adapted to receive information that identifies a similarity threshold; a hybridization unit adapted to identify a degree of similarity and a starting position and a finishing position of a similar portion for one to one combinations with the base sequences included in the first base sequence information as a target, and the base sequences included in the second base sequence information as a probe; and a similar base sequence counting unit adapted to count for each probe a number of the targets for which the identified degree of similarity is greater than or equal to the similarity threshold, and storing the count in the storage unit.