Sequence alignment method and system based on CPU parallel computing, storage medium and terminal

The invention discloses a sequence alignment method and system based on CPU parallel computing, a storage medium and a terminal, and belongs to the field of bioinformatics, and the method comprises the following steps: receiving RNA-seq alignment requests submitted by multiple users at the same time...

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Bibliographische Detailangaben
Hauptverfasser: ZHU LINGFENG, CHANG HUNGMING, DENG HAIBO, WANG ZHONGJIAN, YUAN XIRU
Format: Patent
Sprache:chi ; eng
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Zusammenfassung:The invention discloses a sequence alignment method and system based on CPU parallel computing, a storage medium and a terminal, and belongs to the field of bioinformatics, and the method comprises the following steps: receiving RNA-seq alignment requests submitted by multiple users at the same time at a server side; according to different RNA-seq comparison requests, a multi-thread comparison subtask is created; and writing a server program by adopting a Go language, and distributing each comparison subtask to different computing resources for parallel comparison to obtain a comparison result. According to the method, the computing performance can be guaranteed, the actual demand for processing the multi-user concurrent requests is considered, meanwhile, the data transmission and processing strategy can be dynamically adjusted according to the task amount and the user amount of the requests, and it is guaranteed that the system can still keep good performance under the high-load condition. 本发明公开了基于CPU并行计算的序列