Disclosing quantitative RT‐PCR raw data during manuscript submission: a call for action

Accuracy and transparency of scientific data are becoming more and more relevant with the increasing concern regarding the evaluation of data reproducibility in many research areas. This concern is also true for quantifying coding and noncoding RNAs, with the remarkable increase in publications repo...

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Veröffentlicht in:Molecular oncology 2023-05, Vol.17 (5), p.713-717
Hauptverfasser: Untergasser, Andreas, Hellemans, Jan, Pfaffl, Michael W., Ruijter, Jan M., Hoff, Maurice J. B., Dragomir, Mihnea P., Adamoski, Douglas, Dias, Sandra Martha Gomes, Reis, Rui Manuel, Ferracin, Manuela, Dias‐Neto, Emmanuel, Marsh, Ian, Kubista, Mikael, Fabbri, Muller, Goel, Ajay, Slabý, Ondřej, Knutsen, Erik, Chen, Baoqing, Negrini, Massimo, Mimori, Koshi, Pichler, Martin, Papatriantafyllou, Maria, Anfossi, Simone, Schmittgen, Thomas D., Huggett, Jim, Bustin, Stephen, Vandesompele, Jo, Calin, George A.
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Sprache:eng
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Zusammenfassung:Accuracy and transparency of scientific data are becoming more and more relevant with the increasing concern regarding the evaluation of data reproducibility in many research areas. This concern is also true for quantifying coding and noncoding RNAs, with the remarkable increase in publications reporting RNA profiling and sequencing studies. To address the problem, we propose the following recommendations: (a) accurate documentation of experimental procedures in Materials and methods (and not only in the supplementary information, as many journals have a strict mandate for making Materials and methods as visible as possible in the main text); (b) submission of RT‐qPCR raw data for all experiments reported; and (c) adoption of a unified, simple format for submitted RT‐qPCR raw data. The Real‐time PCR Data Essential Spreadsheet Format (RDES) was created for this purpose. Evaluation of data reproducibility is a growing concern in many research areas. This is especially relevant when examining quantification methods of RNA profiling. The HEROIC consortium members propose to the scientific and medical communities as well as editors to adopt a unified, simple format for submission of RT‐qPCR raw data to journals at the time of manuscript submission.
ISSN:1574-7891
1878-0261
1878-0261
DOI:10.1002/1878-0261.13418