A Hybrid Genome Assembly Resource for Podosphaera xanthii , the Main Causal Agent of Powdery Mildew Disease in Cucurbits

is the main causal agent of powdery mildew in cucurbits and, arguably, the most important fungal pathogen of cucurbit crops. Here, we present the first reference genome assembly for . We performed a hybrid genome assembly, using reads from Illumina NextSeq550 and PacBio Sequel S3. The short and long...

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Veröffentlicht in:Molecular plant-microbe interactions 2021-03, Vol.34 (3), p.319-324
Hauptverfasser: Polonio, Álvaro, Díaz-Martínez, Luis, Fernández-Ortuño, Dolores, de Vicente, Antonio, Romero, Diego, López-Ruiz, Francisco J, Pérez-García, Alejandro
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Sprache:eng
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Zusammenfassung:is the main causal agent of powdery mildew in cucurbits and, arguably, the most important fungal pathogen of cucurbit crops. Here, we present the first reference genome assembly for . We performed a hybrid genome assembly, using reads from Illumina NextSeq550 and PacBio Sequel S3. The short and long reads were assembled into 1,727 scaffolds with an N size of 163,173 bp, resulting in a 142-Mb genome size. The combination of homology-based and predictions allowed the prediction of 14,911 complete genes. Repetitive sequences comprised 76.2% of the genome. Our genome assembly improves considerably the molecular resources for research on -cucurbit interactions and provides new opportunities for further genomics, transcriptomics, and evolutionary studies in powdery mildew fungi.[Formula: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.
ISSN:0894-0282
1943-7706
DOI:10.1094/MPMI-08-20-0237-A