The complete chloroplast genome of high production individual tree of Coffea arabica L. (Rubiaceae)

C iComplete chloroplast genome of Coffea arabica of high production individual (HP1) is 155,191 bp long and has four subregions: 85,164 bp of large single copy (LSC) and 18,135 bp of small single copy (SSC) regions, separated by 25,946 bp of inverted repeat (IR) regions including 131 genes (86 protein-coding genes, eight rRNAs, and 37 tRNAs). The overall GC content of the chloroplast genome is 37.4% and those in the LSC, SSC, and IR regions are 35.4%, 31.3%, and 43.0%, respectively. In comparison to two coffee chloroplasts, three non-synonymous SNP are identified in ycf1 and ndhf and two deletions on HP1 are in ycf1.